Variant report

Variant	rs62321382
Chromosome Location	chr4:107115579-107115580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17036530	0.84[AMR][1000 genomes]
rs17036535	0.84[AMR][1000 genomes]
rs4472215	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4552462	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62318075	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62318079	0.92[EUR][1000 genomes]
rs62318080	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318082	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318085	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62318087	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62318088	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62318089	0.84[EUR][1000 genomes]
rs62318090	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62318091	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62318092	0.83[AFR][1000 genomes]
rs62318116	0.83[AFR][1000 genomes]
rs62318123	0.83[EUR][1000 genomes]
rs62320116	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62320117	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62320120	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62320124	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62320128	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62320129	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62321362	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62321363	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321364	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62321366	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321372	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62321373	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62321374	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62321375	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62321376	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62321377	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62321378	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62321380	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72660519	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72660521	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72660524	0.85[EUR][1000 genomes]
rs72660532	0.80[AFR][1000 genomes]
rs72675692	0.84[AMR][1000 genomes]
rs72675702	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72677343	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72677353	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:107075800-107118200	Weak transcription	Brain Substantia Nigra	brain
4	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
5	chr4:107078200-107116000	Weak transcription	Colonic Mucosa	Colon
6	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
8	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:107084000-107116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:107084000-107129800	Weak transcription	Lung	lung
11	chr4:107084200-107129600	Weak transcription	Aorta	Aorta
12	chr4:107084400-107141400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:107085000-107117800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:107085000-107129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:107085000-107150000	Weak transcription	Dnd41	blood
16	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
17	chr4:107087200-107129800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:107088400-107166400	Weak transcription	K562	blood
19	chr4:107088800-107116400	Weak transcription	NH-A	brain
20	chr4:107091200-107129200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:107091400-107116200	Weak transcription	Fetal Intestine Small	intestine
22	chr4:107091400-107116800	Weak transcription	Brain Germinal Matrix	brain
23	chr4:107091400-107117600	Weak transcription	Fetal Brain Male	brain
24	chr4:107091400-107129800	Weak transcription	Pancreas	Pancrea
25	chr4:107103200-107116000	Weak transcription	Psoas Muscle	Psoas
26	chr4:107103200-107119000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr4:107104200-107116800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:107104600-107140800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:107105000-107169600	Weak transcription	Fetal Brain Female	brain
30	chr4:107106800-107176400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:107107000-107149600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr4:107107200-107130000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:107108800-107129600	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:107110000-107116800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:107111800-107116600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:107111800-107160200	Weak transcription	NHEK	skin
37	chr4:107112000-107117600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:107112200-107116200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:107112400-107129400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:107112400-107170400	Weak transcription	Thymus	Thymus
41	chr4:107112600-107129600	Weak transcription	Gastric	stomach
42	chr4:107113000-107150800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:107113000-107154800	Weak transcription	Brain Angular Gyrus	brain
44	chr4:107113200-107130800	Weak transcription	HSMM	muscle
45	chr4:107113400-107150200	Weak transcription	Osteobl	bone
46	chr4:107113600-107133400	Weak transcription	Fetal Lung	lung
47	chr4:107114000-107116800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr4:107114400-107149200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:107114600-107127600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr4:107114600-107149600	Weak transcription	HSMMtube	muscle

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