Variant report

Variant	rs62320069
Chromosome Location	chr4:106942768-106942769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TBCK-1	chr4:106940966-106943635	XLOC_004040

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10489129	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11942385	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036506	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036511	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036530	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036535	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4264831	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4472215	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4552462	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62318075	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62318080	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62318082	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62320070	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320112	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320113	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320115	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320116	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320117	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320120	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320124	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320128	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320129	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62321362	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62321363	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62321364	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62321366	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62321372	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321373	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321374	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321375	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321376	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62321377	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62321378	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62321380	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67566720	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6853347	0.89[EUR][1000 genomes]
rs72675686	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72675692	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72675702	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72677343	0.84[AFR][1000 genomes]
rs72677353	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422027	chr4:106936604-106946435	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3465900	chr4:106938503-106945201	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3512204	chr4:106939353-106944351	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3512202	chr4:106939700-106944356	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3512200	chr4:106939753-106944301	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv18236	chr4:106940112-106943263	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv819910	chr4:106940232-106945512	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3465898	chr4:106940339-106943358	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv3512199	chr4:106940360-106943377	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv3512203	chr4:106940364-106943371	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv3512198	chr4:106940382-106943313	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv3465895	chr4:106940391-106943324	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv3465899	chr4:106940404-106943294	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv3512201	chr4:106940410-106943316	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	esv3512206	chr4:106940412-106943318	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv822679	chr4:106940436-106942896	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv3465896	chr4:106940454-106943270	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv3512205	chr4:106940464-106943271	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv3465901	chr4:106940468-106943269	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv3512207	chr4:106940468-106943269	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106935000-106948400	Weak transcription	Aorta	Aorta
2	chr4:106940400-106943000	Enhancers	HSMMtube	muscle
3	chr4:106941000-106943200	Enhancers	Fetal Heart	heart
4	chr4:106941000-106944000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:106941200-106944400	Enhancers	Primary hematopoietic stem cells	blood
6	chr4:106941400-106943800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:106942400-106942800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:106942600-106942800	Enhancers	HSMM	muscle

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