Variant report

Variant	rs57052360
Chromosome Location	chr2:205233527-205233528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56760289	1.00[AMR][1000 genomes]
rs57519924	1.00[AMR][1000 genomes]
rs59083056	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875721	chr2:205232072-205306024	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205229800-205238600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:205230200-205234800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:205230800-205234000	Weak transcription	Fetal Kidney	kidney
4	chr2:205231000-205233600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:205231000-205234200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:205231200-205234600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:205232800-205234400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:205233200-205234400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:205233200-205234400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:205233200-205234400	Weak transcription	Fetal Lung	lung
11	chr2:205233200-205234800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:205233400-205234600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links