Variant report

Variant	rs56760289
Chromosome Location	chr2:205350500-205350501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16836499	1.00[AMR][1000 genomes]
rs57052360	1.00[AMR][1000 genomes]
rs57519924	1.00[AMR][1000 genomes]
rs58776976	1.00[AMR][1000 genomes]
rs59083056	1.00[AMR][1000 genomes]
rs6739672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv963955	chr2:205347924-205351240	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205341600-205351400	Weak transcription	Aorta	Aorta
2	chr2:205348400-205351800	Enhancers	Fetal Muscle Leg	muscle
3	chr2:205348400-205352600	Enhancers	Fetal Brain Male	brain
4	chr2:205348800-205351600	Weak transcription	Fetal Intestine Small	intestine
5	chr2:205348800-205351600	Weak transcription	HSMMtube	muscle
6	chr2:205348800-205352400	Weak transcription	HepG2	liver
7	chr2:205349000-205350800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:205349000-205351400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:205349000-205351400	Weak transcription	Fetal Intestine Large	intestine
10	chr2:205349000-205351400	Weak transcription	Fetal Lung	lung
11	chr2:205349000-205351600	Weak transcription	Fetal Kidney	kidney
12	chr2:205349800-205353000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:205350200-205351400	Enhancers	Fetal Brain Female	brain
14	chr2:205350200-205351600	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:205350400-205350600	Enhancers	NHLF	lung
16	chr2:205350400-205352600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links