Variant report

Variant	rs58776976
Chromosome Location	chr2:205468031-205468032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16836499	1.00[AMR][1000 genomes]
rs41454345	1.00[AMR][1000 genomes]
rs55885667	1.00[AMR][1000 genomes]
rs55900334	1.00[AMR][1000 genomes]
rs56760289	1.00[AMR][1000 genomes]
rs57519924	1.00[AMR][1000 genomes]
rs57973835	1.00[AMR][1000 genomes]
rs58058037	1.00[AMR][1000 genomes]
rs59083056	1.00[AMR][1000 genomes]
rs60803761	1.00[AMR][1000 genomes]
rs6739672	1.00[AMR][1000 genomes]
rs73982509	1.00[AMR][1000 genomes]
rs73982510	1.00[AMR][1000 genomes]
rs73982518	1.00[AMR][1000 genomes]
rs73982520	1.00[AMR][1000 genomes]
rs73984285	1.00[AMR][1000 genomes]
rs73984292	1.00[AMR][1000 genomes]
rs73986205	1.00[AMR][1000 genomes]
rs73986206	1.00[AMR][1000 genomes]
rs73986207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205461400-205468800	Weak transcription	Aorta	Aorta
2	chr2:205466400-205468400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:205466800-205470600	Weak transcription	Fetal Kidney	kidney
4	chr2:205467000-205468200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:205467400-205469800	Weak transcription	Right Ventricle	heart
6	chr2:205467400-205477200	Enhancers	Colon Smooth Muscle	Colon
7	chr2:205467600-205468600	Weak transcription	Ovary	ovary
8	chr2:205468000-205468800	Enhancers	HSMM	muscle
9	chr2:205468000-205469400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr2:205468000-205469600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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