Variant report

Variant	rs6739672
Chromosome Location	chr2:205545637-205545638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205543850..205546567-chr2:205547015..205549174,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16836499	1.00[AMR][1000 genomes]
rs41454345	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55885667	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55900334	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56034781	1.00[AMR][1000 genomes]
rs56760289	1.00[AMR][1000 genomes]
rs57973835	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58058037	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58776976	1.00[AMR][1000 genomes]
rs59083056	1.00[AMR][1000 genomes]
rs59155262	1.00[AMR][1000 genomes]
rs60803761	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73982509	1.00[AMR][1000 genomes]
rs73982510	1.00[AMR][1000 genomes]
rs73982518	1.00[AMR][1000 genomes]
rs73982520	1.00[AMR][1000 genomes]
rs73982553	1.00[AMR][1000 genomes]
rs73984285	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984292	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986205	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986206	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875722	chr2:205462099-205572718	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875723	chr2:205489653-205612846	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv584243	chr2:205539092-205630618	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205521000-205546200	Weak transcription	Aorta	Aorta
2	chr2:205528000-205546200	Weak transcription	Pancreas	Pancrea
3	chr2:205539800-205547600	Weak transcription	HUVEC	blood vessel
4	chr2:205543600-205548200	Weak transcription	Fetal Intestine Small	intestine
5	chr2:205544200-205545800	Weak transcription	HSMMtube	muscle
6	chr2:205544600-205547000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:205544800-205546400	Enhancers	NH-A	brain
8	chr2:205544800-205546400	Enhancers	Osteobl	bone
9	chr2:205544800-205547000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:205544800-205547600	Enhancers	HSMM	muscle
11	chr2:205545200-205547000	Enhancers	Rectal Smooth Muscle	rectum
12	chr2:205545200-205547600	Enhancers	Colon Smooth Muscle	Colon
13	chr2:205545400-205546400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:205545400-205546600	Enhancers	NHLF	lung
15	chr2:205545400-205547000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:205545600-205546400	Enhancers	Stomach Smooth Muscle	stomach
17	chr2:205545600-205546600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:205545600-205547600	Enhancers	Fetal Lung	lung
19	chr2:205545600-205560800	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links