Variant report

Variant	rs59083056
Chromosome Location	chr2:205440327-205440328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16836499	1.00[AMR][1000 genomes]
rs41454345	1.00[AMR][1000 genomes]
rs55885667	1.00[AMR][1000 genomes]
rs55900334	1.00[AMR][1000 genomes]
rs56760289	1.00[AMR][1000 genomes]
rs57052360	1.00[AMR][1000 genomes]
rs57519924	1.00[AMR][1000 genomes]
rs57973835	1.00[AMR][1000 genomes]
rs58058037	1.00[AMR][1000 genomes]
rs58776976	1.00[AMR][1000 genomes]
rs60803761	1.00[AMR][1000 genomes]
rs61356896	1.00[AFR][1000 genomes]
rs6739672	1.00[AMR][1000 genomes]
rs73984285	1.00[AMR][1000 genomes]
rs73984292	1.00[AMR][1000 genomes]
rs73986205	1.00[AMR][1000 genomes]
rs73986206	1.00[AMR][1000 genomes]
rs73986207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205425800-205454400	Weak transcription	HSMM	muscle
2	chr2:205431600-205440600	Weak transcription	Adipose Nuclei	Adipose
3	chr2:205435000-205441000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:205438200-205440600	Enhancers	Brain Substantia Nigra	brain
5	chr2:205438800-205448600	Weak transcription	Left Ventricle	heart
6	chr2:205438800-205458000	Weak transcription	Gastric	stomach
7	chr2:205439000-205444200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr2:205439400-205441200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:205439400-205444000	Weak transcription	Pancreas	Pancrea
10	chr2:205439600-205441000	Enhancers	Fetal Intestine Large	intestine
11	chr2:205439600-205441000	Enhancers	Fetal Intestine Small	intestine
12	chr2:205439600-205444000	Weak transcription	Ovary	ovary
13	chr2:205439600-205450600	Weak transcription	Aorta	Aorta
14	chr2:205440200-205440400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:205440200-205441000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:205440200-205441000	Enhancers	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links