Variant report

Variant	rs73982510
Chromosome Location	chr2:205644181-205644182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16836499	1.00[AMR][1000 genomes]
rs41454345	1.00[AMR][1000 genomes]
rs55885667	1.00[AMR][1000 genomes]
rs55900334	1.00[AMR][1000 genomes]
rs56034781	1.00[AMR][1000 genomes]
rs57973835	1.00[AMR][1000 genomes]
rs58058037	1.00[AMR][1000 genomes]
rs58776976	1.00[AMR][1000 genomes]
rs59155262	1.00[AMR][1000 genomes]
rs60803761	1.00[AMR][1000 genomes]
rs6739672	1.00[AMR][1000 genomes]
rs73982509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73982518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73982520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73982553	1.00[AMR][1000 genomes]
rs73984285	1.00[AMR][1000 genomes]
rs73984292	1.00[AMR][1000 genomes]
rs73986205	1.00[AMR][1000 genomes]
rs73986206	1.00[AMR][1000 genomes]
rs73986207	1.00[AMR][1000 genomes]
rs7568881	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875724	chr2:205572718-205727222	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv875726	chr2:205588773-205700834	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv875727	chr2:205626483-205715245	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205635600-205645400	Weak transcription	Fetal Brain Male	brain
2	chr2:205640200-205645400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:205642200-205645400	Weak transcription	Fetal Lung	lung
4	chr2:205642200-205659600	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:205643600-205647000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:205643800-205644800	Weak transcription	Fetal Brain Female	brain
7	chr2:205644000-205647000	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links