The 2.0 version of rSNPBase

Variant report

Variant rs57082481
Chromosome Location chr17:17852266-17852267
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:17828200-17861000 Weak transcription Primary B cells from cord blood blood
2 chr17:17828600-17858000 Weak transcription Primary B cells from peripheral blood blood
3 chr17:17836400-17853000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr17:17839400-17858800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr17:17839400-17860200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr17:17839800-17859800 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr17:17844800-17859800 Weak transcription Colonic Mucosa Colon
8 chr17:17844800-17861400 Weak transcription Liver Liver
9 chr17:17847000-17858000 Weak transcription Adipose Nuclei Adipose
10 chr17:17847000-17860200 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr17:17847200-17854000 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr17:17847200-17861400 Weak transcription Fetal Kidney kidney
13 chr17:17847400-17852400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr17:17847400-17856000 Weak transcription Primary T killer naive cells fromperipheralblood blood
15 chr17:17847400-17856800 Weak transcription Thymus Thymus
16 chr17:17847400-17859800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr17:17847400-17860200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr17:17847400-17860600 Weak transcription K562 blood
19 chr17:17847400-17861600 Weak transcription Primary hematopoietic stem cells blood
20 chr17:17847400-17864000 Weak transcription Aorta Aorta
21 chr17:17847600-17854400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr17:17847600-17855200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr17:17847600-17856000 Weak transcription Primary T cells from cord blood blood
24 chr17:17847600-17856000 Weak transcription Primary T cells fromperipheralblood blood
25 chr17:17847600-17857000 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr17:17847600-17860200 Weak transcription Hela-S3 cervix
27 chr17:17847800-17854000 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr17:17847800-17856200 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr17:17847800-17856600 Weak transcription Fetal Thymus thymus
30 chr17:17848200-17852600 Weak transcription Brain Angular Gyrus brain
31 chr17:17848200-17852800 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr17:17848200-17854600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr17:17848200-17856800 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr17:17848400-17855200 Weak transcription Brain Germinal Matrix brain
35 chr17:17848400-17858000 Weak transcription Brain Hippocampus Middle brain
36 chr17:17848400-17859800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr17:17848400-17861200 Weak transcription Fetal Muscle Leg muscle
38 chr17:17848400-17862200 Weak transcription Fetal Muscle Trunk muscle
39 chr17:17848600-17855200 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr17:17848600-17856800 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr17:17848600-17858000 Weak transcription HSMMtube muscle
42 chr17:17848600-17860600 Weak transcription Colon Smooth Muscle Colon
43 chr17:17848600-17861400 Weak transcription Brain Substantia Nigra brain
44 chr17:17848600-17861600 Weak transcription Rectal Smooth Muscle rectum
45 chr17:17848800-17852600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr17:17848800-17856800 Weak transcription Stomach Smooth Muscle stomach
47 chr17:17848800-17858000 Weak transcription Fetal Heart heart
48 chr17:17848800-17863000 Weak transcription Fetal Brain Female brain
49 chr17:17849000-17855000 Weak transcription Brain Anterior Caudate brain
50 chr17:17849000-17861600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015