Variant report

Variant	rs570829522
Chromosome Location	chr11:35123692-35123693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35122584..35124925-chr11:35126765..35129371,2	MCF-7	breast:
2	chr11:35121360..35123846-chr11:35132606..35135309,2	K562	blood:
3	chr11:35123609..35125478-chr11:35160638..35163395,2	MCF-7	breast:
4	chr11:35123473..35125204-chr11:35129634..35132229,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000026508	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv975326	chr11:35103908-35125981	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35110400-35124000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:35118400-35124600	Enhancers	Colon Smooth Muscle	Colon
3	chr11:35118600-35124000	Enhancers	Adipose Nuclei	Adipose
4	chr11:35118600-35125200	Enhancers	Stomach Smooth Muscle	stomach
5	chr11:35119400-35124600	Enhancers	Fetal Stomach	stomach
6	chr11:35119400-35125400	Enhancers	Fetal Muscle Leg	muscle
7	chr11:35119400-35127200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:35119600-35124400	Enhancers	Rectal Smooth Muscle	rectum
9	chr11:35119600-35126400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:35120800-35126800	Weak transcription	Left Ventricle	heart
11	chr11:35121200-35125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:35121400-35126200	Weak transcription	K562	blood
13	chr11:35121400-35127000	Weak transcription	Right Atrium	heart
14	chr11:35121600-35124800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:35121800-35124800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:35121800-35124800	Weak transcription	HMEC	breast
17	chr11:35121800-35125000	Weak transcription	NHEK	skin
18	chr11:35122200-35127400	Enhancers	HSMMtube	muscle
19	chr11:35122400-35124800	Weak transcription	HSMM	muscle
20	chr11:35122400-35124800	Weak transcription	NH-A	brain
21	chr11:35122400-35125000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:35122400-35126800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:35122400-35127000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:35122400-35132600	Weak transcription	Right Ventricle	heart
25	chr11:35122600-35125200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:35123000-35124000	Weak transcription	NHLF	lung
27	chr11:35123000-35125000	Weak transcription	Osteobl	bone
28	chr11:35123000-35125400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:35123000-35132200	Weak transcription	Lung	lung
30	chr11:35123000-35132600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:35123000-35132600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:35123200-35125000	Weak transcription	Aorta	Aorta
33	chr11:35123400-35124400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr11:35123400-35126400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:35123400-35126600	Weak transcription	NHDF-Ad	bronchial
36	chr11:35123600-35126800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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