Variant report

Variant	rs57088507
Chromosome Location	chr4:88251076-88251077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11734330	0.81[AFR][1000 genomes]
rs11931674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11934060	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939903	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11940002	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946007	0.81[AFR][1000 genomes]
rs11946391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55663915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55878019	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55879514	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55933669	1.00[AMR][1000 genomes]
rs55968517	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55974821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56113853	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56196275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56293231	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56336118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57743836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57806008	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57948983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58637341	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58985971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59037460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59137232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59157345	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59311794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59476561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59593300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60371489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60404847	0.85[AMR][1000 genomes]
rs60661283	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60690297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60955120	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61262236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61367052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61514672	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61594871	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61646372	0.91[AFR][1000 genomes]
rs6820688	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839181	0.85[AMR][1000 genomes]
rs73839185	1.00[AMR][1000 genomes]
rs73839189	1.00[AMR][1000 genomes]
rs73839191	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839192	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841126	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841128	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73841136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841141	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841142	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841144	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841145	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7660178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7665638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7671726	0.85[AMR][1000 genomes]
rs7698406	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870296	chr4:88173534-88295927	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv4412	chr4:88237813-88283368	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88238600-88253400	Weak transcription	HepG2	liver
2	chr4:88239400-88255400	Weak transcription	A549	lung
3	chr4:88250600-88259400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links