Variant report

Variant	rs7671726
Chromosome Location	chr4:88236258-88236259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11931674	0.85[AMR][1000 genomes]
rs11934060	0.85[AMR][1000 genomes]
rs11939903	0.85[AMR][1000 genomes]
rs11940002	0.85[AMR][1000 genomes]
rs11946391	0.85[AMR][1000 genomes]
rs11946465	0.85[AMR][1000 genomes]
rs55663915	0.85[AMR][1000 genomes]
rs55879514	0.85[AMR][1000 genomes]
rs55933669	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55968517	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55974821	0.85[AMR][1000 genomes]
rs56113853	0.85[AMR][1000 genomes]
rs56196275	0.85[AMR][1000 genomes]
rs56293231	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56336118	0.85[AMR][1000 genomes]
rs57088507	0.85[AMR][1000 genomes]
rs57743836	0.85[AMR][1000 genomes]
rs57806008	0.85[AMR][1000 genomes]
rs57948983	0.85[AMR][1000 genomes]
rs58637341	1.00[AMR][1000 genomes]
rs58985971	0.85[AMR][1000 genomes]
rs59037460	0.85[AMR][1000 genomes]
rs59137232	0.85[AMR][1000 genomes]
rs59157345	0.85[AMR][1000 genomes]
rs59311794	0.85[AMR][1000 genomes]
rs59476561	0.85[AMR][1000 genomes]
rs59593300	0.85[AMR][1000 genomes]
rs60371489	0.85[AMR][1000 genomes]
rs60404847	1.00[AMR][1000 genomes]
rs60661283	0.85[AMR][1000 genomes]
rs60690297	0.85[AMR][1000 genomes]
rs60955120	0.85[AMR][1000 genomes]
rs61262236	0.85[AMR][1000 genomes]
rs61367052	0.85[AMR][1000 genomes]
rs61514672	1.00[AMR][1000 genomes]
rs61594871	0.85[AMR][1000 genomes]
rs6820688	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73839185	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73839189	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73839191	0.85[AMR][1000 genomes]
rs73839192	0.85[AMR][1000 genomes]
rs73841125	0.85[AMR][1000 genomes]
rs73841126	0.85[AMR][1000 genomes]
rs73841128	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841136	0.85[AMR][1000 genomes]
rs73841139	0.85[AMR][1000 genomes]
rs73841140	0.85[AMR][1000 genomes]
rs73841141	0.85[AMR][1000 genomes]
rs73841142	0.85[AMR][1000 genomes]
rs73841143	0.85[AMR][1000 genomes]
rs73841144	0.85[AMR][1000 genomes]
rs73841145	0.85[AMR][1000 genomes]
rs7660178	0.85[AMR][1000 genomes]
rs7665638	0.85[AMR][1000 genomes]
rs7698406	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870296	chr4:88173534-88295927	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv879527	chr4:88194170-88250203	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv1802846	chr4:88211056-88246450	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv525583	chr4:88234593-88239150	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88225400-88237800	Strong transcription	Liver	Liver
2	chr4:88228000-88239600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:88228400-88237800	Weak transcription	Hela-S3	cervix
4	chr4:88229000-88245000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:88230000-88240000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:88230600-88239600	Weak transcription	Primary T cells from cord blood	blood
7	chr4:88231400-88237400	Weak transcription	Left Ventricle	heart
8	chr4:88234400-88237000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:88235200-88243800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:88235600-88236800	Enhancers	Pancreas	Pancrea
11	chr4:88235600-88241400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:88235800-88238400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:88235800-88242600	Weak transcription	Adipose Nuclei	Adipose
14	chr4:88236000-88236400	Weak transcription	Ovary	ovary
15	chr4:88236000-88236600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:88236200-88236400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:88236200-88236600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:88236200-88236600	Active TSS	Osteobl	bone

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