Variant report

Variant	rs73841128
Chromosome Location	chr4:88248074-88248075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:88247877-88248575	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88241962..88245128-chr4:88247108..88249633,3	MCF-7	breast:

Variant related genes	Relation type
HSD17B13	TF binding region
ENSG00000170509	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11931674	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11934060	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11939903	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11940002	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11946391	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11946465	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55663915	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55878019	0.93[AFR][1000 genomes]
rs55879514	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55933669	0.85[AMR][1000 genomes]
rs55968517	0.85[AMR][1000 genomes]
rs55974821	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56113853	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56196275	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56293231	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56336118	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57088507	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57743836	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57806008	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57948983	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58637341	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58985971	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59037460	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59137232	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59157345	0.85[AMR][1000 genomes]
rs59311794	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59476561	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59593300	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60371489	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60404847	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60661283	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60690297	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60955120	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61262236	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61367052	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61514672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61594871	0.85[AMR][1000 genomes]
rs61646372	0.85[AFR][1000 genomes]
rs6820688	0.85[AMR][1000 genomes]
rs73839185	0.85[AMR][1000 genomes]
rs73839189	0.85[AMR][1000 genomes]
rs73839191	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73839192	0.85[AMR][1000 genomes]
rs73841125	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73841126	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73841136	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73841139	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73841140	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73841141	0.85[AMR][1000 genomes]
rs73841142	0.85[AMR][1000 genomes]
rs73841143	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73841144	0.85[AMR][1000 genomes]
rs73841145	0.85[AMR][1000 genomes]
rs7660178	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7665638	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7671726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7698406	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870296	chr4:88173534-88295927	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv879527	chr4:88194170-88250203	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv4412	chr4:88237813-88283368	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88238600-88253400	Weak transcription	HepG2	liver
2	chr4:88239400-88255400	Weak transcription	A549	lung
3	chr4:88247800-88249200	Enhancers	Fetal Intestine Large	intestine
4	chr4:88248000-88248600	Enhancers	Fetal Intestine Small	intestine

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