Variant report

Variant	rs57106142
Chromosome Location	chr7:21200342-21200343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17143942	0.85[AFR][1000 genomes]
rs3934483	0.90[AFR][1000 genomes]
rs4072217	0.90[AFR][1000 genomes]
rs4490733	0.90[AFR][1000 genomes]
rs4534047	0.90[ASN][1000 genomes]
rs58465671	0.88[ASN][1000 genomes]
rs58641677	0.93[AFR][1000 genomes]
rs59562853	0.93[AFR][1000 genomes]
rs59592870	0.83[AFR][1000 genomes]
rs60626035	0.82[AFR][1000 genomes]
rs60656967	0.85[AFR][1000 genomes]
rs61249337	0.90[AFR][1000 genomes]
rs61520146	0.85[AFR][1000 genomes]
rs61590965	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73279571	0.90[AFR][1000 genomes]
rs73279573	0.87[AFR][1000 genomes]
rs73279575	0.85[AFR][1000 genomes]
rs7803836	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21199600-21200800	Enhancers	Brain Germinal Matrix	brain
2	chr7:21200200-21200600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:21200200-21200600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:21200200-21200800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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