Variant report

Variant	rs73279575
Chromosome Location	chr7:21208418-21208419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17143942	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17143975	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17143998	1.00[ASN][1000 genomes]
rs1881960	1.00[ASN][1000 genomes]
rs2390479	0.90[ASN][1000 genomes]
rs2893031	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3934483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072217	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4316063	0.90[ASN][1000 genomes]
rs4490733	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55885414	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56383835	1.00[ASN][1000 genomes]
rs57106142	0.85[AFR][1000 genomes]
rs58258104	1.00[ASN][1000 genomes]
rs58641677	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59562853	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59592870	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60626035	0.89[ASN][1000 genomes]
rs60656967	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61249337	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61520146	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61552779	1.00[ASN][1000 genomes]
rs61590965	0.84[AFR][1000 genomes]
rs73279571	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73685044	0.90[ASN][1000 genomes]
rs7789062	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21207600-21208600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr7:21207800-21208800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr7:21207800-21208800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr7:21208000-21208600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:21208000-21208600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr7:21208000-21208600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:21208000-21211400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:21208200-21208600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:21208200-21208800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr7:21208200-21209000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr7:21208200-21209400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr7:21208400-21208600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:21208400-21210200	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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