Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17143942	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17143998	0.89[ASN][1000 genomes]
rs1881960	0.89[ASN][1000 genomes]
rs2893031	0.89[ASN][1000 genomes]
rs3934483	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4072217	0.89[ASN][1000 genomes]
rs4490733	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs55885414	0.89[ASN][1000 genomes]
rs56383835	0.89[ASN][1000 genomes]
rs57106142	0.82[AFR][1000 genomes]
rs58258104	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58641677	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59562853	0.88[AFR][1000 genomes]
rs59592870	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60656967	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61249337	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61520146	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61552779	0.89[ASN][1000 genomes]
rs61590965	0.80[AFR][1000 genomes]
rs73279571	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73279573	0.89[ASN][1000 genomes]
rs73279575	0.89[ASN][1000 genomes]
rs7789062	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21180600-21183600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:21180800-21181600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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