Variant report

Variant	rs571182492
Chromosome Location	chr11:66112833-66112834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:238)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:238 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:66112314-66112936	NB4	blood:	n/a	n/a
2	ELF1	chr11:66112280-66113047	A549	lung:	n/a	n/a
3	TAF1	chr11:66112398-66112836	K562	blood:	n/a	n/a
4	CEBPB	chr11:66112361-66112941	GM12878	blood:	n/a	n/a
5	TEAD4	chr11:66112357-66112836	H1-hESC	embryonic stem cell:	n/a	n/a
6	YY1	chr11:66112373-66112872	SK-N-SH	brain:	n/a	chr11:66112762-66112770
7	TBL1XR1	chr11:66112400-66112879	K562	blood:	n/a	n/a
8	POU2F2	chr11:66112290-66112862	GM12891	blood:	n/a	n/a
9	POLR2A	chr11:66112266-66112914	MCF10A-Er-Src	breast:	n/a	n/a
10	TAF1	chr11:66112228-66112988	ECC-1	luminal epithelium:	n/a	n/a
11	POLR2A	chr11:66112290-66112878	GM18526	blood:	n/a	n/a
12	POLR2A	chr11:66112220-66112897	SK-N-SH	brain:	n/a	n/a
13	TBP	chr11:66112342-66112868	K562	blood:	n/a	n/a
14	POLR2A	chr11:66112129-66112958	GM12892	blood:	n/a	n/a
15	ELK1	chr11:66112418-66112833	Hela-S3	cervix:	n/a	n/a
16	MAZ	chr11:66112328-66112847	Hela-S3	cervix:	n/a	n/a
17	FOSL2	chr11:66112179-66113232	A549	lung:	n/a	n/a
18	POLR2A	chr11:66112295-66112869	GM15510	blood:	n/a	n/a
19	POLR2A	chr11:66112291-66112881	GM12878	blood:	n/a	n/a
20	POLR2A	chr11:66112229-66112882	HUVEC	blood vessel:	n/a	n/a
21	ETS1	chr11:66112259-66112881	K562	blood:	n/a	chr11:66112266-66112279
22	FOXM1	chr11:66112306-66112888	GM12878	blood:	n/a	n/a
23	ELK1	chr11:66112382-66113107	GM12878	blood:	n/a	n/a
24	CREB1	chr11:66112137-66112943	HepG2	liver:	n/a	n/a
25	POLR2A	chr11:66112193-66112882	PFSK-1	brain:	n/a	n/a
26	PML	chr11:66112246-66112943	K562	blood:	n/a	n/a
27	ZMIZ1	chr11:66112439-66112936	K562	blood:	n/a	n/a
28	POLR2A	chr11:66112238-66112840	GM12891	blood:	n/a	n/a
29	POLR2A	chr11:66112271-66112913	GM19193	blood:	n/a	n/a
30	MXI1	chr11:66112242-66112926	Hela-S3	cervix:	n/a	chr11:66112666-66112681
31	STAT5A	chr11:66112147-66112979	GM12878	blood:	n/a	n/a
32	POLR2A	chr11:66112149-66113014	Hela-S3	cervix:	n/a	n/a
33	CBX3	chr11:66112283-66112879	K562	blood:	n/a	n/a
34	POLR2A	chr11:66112077-66112942	K562	blood:	n/a	n/a
35	SIN3AK20	chr11:66111800-66113096	MCF-7	breast:	n/a	n/a
36	MAX	chr11:66112117-66112987	ECC-1	luminal epithelium:	n/a	n/a
37	POLR2A	chr11:66112117-66112956	MCF-7	breast:	n/a	n/a
38	ATF3	chr11:66112325-66112906	A549	lung:	n/a	chr11:66112587-66112598
39	CREB1	chr11:66112188-66113029	K562	blood:	n/a	n/a
40	POLR2A	chr11:66112252-66112908	GM12892	blood:	n/a	n/a
41	NR2F2	chr11:66111907-66112864	K562	blood:	n/a	n/a
42	POLR2A	chr11:66112308-66112918	NB4	blood:	n/a	n/a
43	POLR2A	chr11:66112101-66112960	MCF-7	breast:	n/a	n/a
44	TEAD4	chr11:66112302-66112885	K562	blood:	n/a	n/a
45	YY1	chr11:66112358-66112873	GM12891	blood:	n/a	chr11:66112762-66112770
46	TCF12	chr11:66111978-66113081	A549	lung:	n/a	chr11:66112837-66112844 chr11:66112242-66112252
47	POLR2A	chr11:66112086-66113073	HepG2	liver:	n/a	n/a
48	POLR2A	chr11:66111924-66113004	H1-hESC	embryonic stem cell:	n/a	n/a
49	CREB1	chr11:66112160-66112904	H1-hESC	embryonic stem cell:	n/a	n/a
50	MAX	chr11:66112295-66112945	SK-N-SH	brain:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65625352..65628744-chr11:66111177..66113723,3	K562	blood:
2	chr11:65850193..65852902-chr11:66111593..66113196,2	MCF-7	breast:
3	chr11:66055270..66057597-chr11:66112530..66115409,2	K562	blood:
4	chr11:66108426..66118730-chr11:66133678..66141000,25	MCF-7	breast:
5	chr11:66112568..66115991-chr11:66232682..66235735,3	K562	blood:
6	chr11:66056831..66061115-chr11:66109718..66114909,6	MCF-7	breast:
7	chr11:66077239..66082197-chr11:66111995..66115447,5	MCF-7	breast:
8	chr11:66111080..66113877-chr17:56707692..56710441,2	MCF-7	breast:
9	chr11:66103854..66118324-chr11:66119048..66141728,55	K562	blood:
10	chr11:66079011..66083261-chr11:66109999..66114385,7	MCF-7	breast:
11	chr11:66111992..66114342-chr11:66382242..66384308,3	MCF-7	breast:

No data

Variant related genes	Relation type
BRMS1	TF binding region
ENSG00000255468	TF binding region
ENSG00000174851	Chromatin interaction
ENSG00000174669	Chromatin interaction
ENSG00000179292	Chromatin interaction
ENSG00000199325	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000254458	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000239306	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	nsv897781	chr11:66095967-66116911	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	nsv897782	chr11:66099222-66116911	Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv897783	chr11:66107527-66118676	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv897784	chr11:66111901-66123043	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv897785	chr11:66112574-66123043	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66111200-66113000	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr11:66111200-66115000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:66111400-66113000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:66111400-66113000	Active TSS	A549	lung
5	chr11:66111400-66113000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:66111400-66113200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:66111600-66113000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr11:66111600-66113000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr11:66111600-66113000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr11:66111600-66113000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr11:66111600-66113000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:66111600-66113200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr11:66111600-66113200	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr11:66111600-66114600	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr11:66111800-66113000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr11:66111800-66113000	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr11:66111800-66113000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:66111800-66113000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr11:66111800-66113000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:66111800-66113000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:66111800-66113000	Active TSS	Lung	lung
22	chr11:66112000-66113000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:66112000-66113000	Active TSS	Fetal Kidney	kidney
24	chr11:66112000-66113000	Flanking Active TSS	Fetal Muscle Trunk	muscle
25	chr11:66112000-66113200	Active TSS	Gastric	stomach
26	chr11:66112000-66113600	Active TSS	Ovary	ovary
27	chr11:66112200-66113000	Active TSS	Aorta	Aorta
28	chr11:66112200-66113000	Active TSS	Fetal Brain Female	brain
29	chr11:66112200-66113000	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr11:66112200-66113200	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr11:66112400-66113000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:66112400-66113000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:66112400-66113400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:66112600-66113000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:66112600-66113000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr11:66112600-66113000	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr11:66112600-66113000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr11:66112600-66113000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:66112600-66113000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:66112600-66113000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:66112600-66113000	Flanking Active TSS	Placenta	Placenta
42	chr11:66112600-66113000	Flanking Active TSS	Fetal Thymus	thymus
43	chr11:66112600-66113000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr11:66112600-66113000	Flanking Active TSS	HMEC	breast
45	chr11:66112600-66113600	Flanking Active TSS	Fetal Muscle Leg	muscle
46	chr11:66112600-66114000	Flanking Active TSS	Fetal Brain Male	brain
47	chr11:66112600-66114200	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr11:66112600-66114600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:66112600-66115000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr11:66112600-66115000	Flanking Active TSS	Dnd41	blood

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