Variant report

Variant	rs571212645
Chromosome Location	chr17:15602560-15602561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr17:15602497-15603874	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr17:15602552-15603331	A549	lung:	n/a	n/a
3	POLR2A	chr17:15602538-15603326	HepG2	liver:	n/a	n/a
4	POU2F2	chr17:15602554-15603441	GM12891	blood:	n/a	n/a
5	SP1	chr17:15602420-15603259	A549	lung:	n/a	chr17:15603190-15603197
6	USF1	chr17:15602365-15603321	A549	lung:	n/a	n/a
7	MXI1	chr17:15602411-15603391	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr17:15602209-15603952	GM12878	blood:	n/a	n/a
9	PML	chr17:15602532-15603356	GM12878	blood:	n/a	n/a
10	POLR2A	chr17:15602542-15603931	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr17:15602233-15603933	GM12892	blood:	n/a	n/a
12	POLR2A	chr17:15602543-15603378	Hela-S3	cervix:	n/a	n/a
13	SP1	chr17:15602300-15603342	A549	lung:	n/a	chr17:15603190-15603197
14	POLR2A	chr17:15602485-15603782	MCF-7	breast:	n/a	n/a
15	POLR2A	chr17:15602456-15603659	GM12891	blood:	n/a	n/a
16	SIX5	chr17:15602384-15603292	A549	lung:	n/a	chr17:15602973-15602987 chr17:15602976-15602985 chr17:15602974-15602983
17	POLR2A	chr17:15602532-15603254	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr17:15602518-15603287	PBDE	blood:	n/a	n/a
19	POLR2A	chr17:15602437-15603489	MCF-7	breast:	n/a	n/a
20	POLR2A	chr17:15602450-15603424	ProgFib	skin:	n/a	n/a
21	ESRRA	chr17:15602304-15603165	GM12878	blood:	n/a	n/a
22	POLR2A	chr17:15602400-15604046	GM12892	blood:	n/a	n/a
23	POLR2A	chr17:15602478-15603339	A549	lung:	n/a	n/a
24	POLR2A	chr17:15602530-15603366	GM12891	blood:	n/a	n/a
25	POLR2A	chr17:15602511-15603253	HepG2	liver:	n/a	n/a
26	ZBTB33	chr17:15602555-15603215	GM12878	blood:	n/a	chr17:15602865-15602880 chr17:15602870-15602879
27	POLR2A	chr17:15602401-15603425	Hela-S3	cervix:	n/a	n/a
28	TAF1	chr17:15602556-15603335	GM12891	blood:	n/a	n/a
29	ZNF263	chr17:15602524-15603181	HEK293-T-REx	kidney:	n/a	n/a
30	POLR2A	chr17:15602379-15603358	U87	brain:	n/a	n/a
31	POLR2A	chr17:15602479-15603558	Gliobla	brain:	n/a	n/a
32	MYBL2	chr17:15602434-15603320	HepG2	liver:	n/a	n/a
33	SREBP1	chr17:15602504-15603272	GM12878	blood:	n/a	n/a
34	POLR2A	chr17:15602556-15603403	GM12891	blood:	n/a	n/a
35	TAF1	chr17:15602560-15603783	H1-hESC	embryonic stem cell:	n/a	n/a
36	SREBP2	chr17:15602530-15603282	GM12878	blood:	n/a	n/a
37	POLR2A	chr17:15602116-15603575	PFSK-1	brain:	n/a	n/a
38	USF1	chr17:15602473-15603213	A549	lung:	n/a	n/a
39	POLR2A	chr17:15602453-15603922	PFSK-1	brain:	n/a	n/a
40	POLR2A	chr17:15602501-15603877	H1-hESC	embryonic stem cell:	n/a	n/a
41	HCFC1	chr17:15602398-15603259	Hela-S3	cervix:	n/a	n/a
42	ZBTB33	chr17:15602521-15603213	GM12878	blood:	n/a	chr17:15602865-15602880 chr17:15602870-15602879
43	MYBL2	chr17:15602477-15603275	HepG2	liver:	n/a	n/a
44	HEY1	chr17:15602492-15603319	HepG2	liver:	n/a	n/a
45	POLR2A	chr17:15602553-15603324	Hela-S3	cervix:	n/a	n/a
46	IRF4	chr17:15602481-15603173	GM12878	blood:	n/a	n/a
47	POLR2A	chr17:15602473-15603301	SK-N-SH	brain:	n/a	n/a
48	TCF12	chr17:15602433-15603281	A549	lung:	n/a	n/a
49	POLR2A	chr17:15602487-15603791	GM12892	blood:	n/a	n/a
50	FOXM1	chr17:15602499-15603267	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ZNF286A	TF binding region
ENSG00000187607	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
7	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv518620	chr17:15563393-15608194	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv522564	chr17:15592762-15608194	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
11	nsv962262	chr17:15601321-15609621	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15602000-15602600	Enhancers	Primary B cells from peripheral blood	blood
2	chr17:15602000-15602600	Flanking Active TSS	Dnd41	blood
3	chr17:15602000-15603400	Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr17:15602000-15603400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr17:15602200-15602600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:15602200-15603000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:15602200-15603400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr17:15602200-15603400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr17:15602200-15603400	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr17:15602200-15603400	Active TSS	Thymus	Thymus
11	chr17:15602200-15603800	Active TSS	Duodenum Mucosa	Duodenum
12	chr17:15602200-15604000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:15602200-15604000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:15602200-15604000	Active TSS	A549	lung
15	chr17:15602200-15604200	Active TSS	Osteobl	bone
16	chr17:15602200-15604400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:15602200-15604400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr17:15602200-15604600	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr17:15602200-15604600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr17:15602200-15604600	Active TSS	Brain Germinal Matrix	brain
21	chr17:15602400-15602600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr17:15602400-15602600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr17:15602400-15602600	Enhancers	HSMM	muscle
24	chr17:15602400-15602600	Flanking Active TSS	NHLF	lung
25	chr17:15602400-15603000	Active TSS	Primary T cells fromperipheralblood	blood
26	chr17:15602400-15603200	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr17:15602400-15603200	Active TSS	Fetal Brain Male	brain
28	chr17:15602400-15603200	Active TSS	Monocytes-CD14+_RO01746	blood
29	chr17:15602400-15603400	Active TSS	Primary T cells from cord blood	blood
30	chr17:15602400-15603400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr17:15602400-15603400	Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr17:15602400-15603400	Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr17:15602400-15603400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr17:15602400-15603400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr17:15602400-15603400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr17:15602400-15603400	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr17:15602400-15603400	Active TSS	Brain Angular Gyrus	brain
38	chr17:15602400-15603400	Active TSS	Brain Anterior Caudate	brain
39	chr17:15602400-15603400	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr17:15602400-15603400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr17:15602400-15603400	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr17:15602400-15603400	Active TSS	Ovary	ovary
43	chr17:15602400-15603400	Active TSS	Right Atrium	heart
44	chr17:15602400-15603400	Active TSS	NHDF-Ad	bronchial
45	chr17:15602400-15603600	Active TSS	Fetal Thymus	thymus
46	chr17:15602400-15603600	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr17:15602400-15603600	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr17:15602400-15603800	Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr17:15602400-15603800	Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr17:15602400-15603800	Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links