Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr15:52976174-52976661	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:52973784..52977367-chr15:53024530..53026901,4	MCF-7	breast:
2	chr15:52885203..52887459-chr15:52975088..52977971,2	MCF-7	breast:
3	chr15:52969156..52972877-chr15:52974299..52978705,7	K562	blood:
4	chr15:52974992..52977399-chr15:52978730..52980640,2	K562	blood:

Variant related genes	Relation type
FAM214A	TF binding region
ENSG00000047346	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17708373	0.95[EUR][1000 genomes]
rs2414172	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35689765	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3751613	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59336405	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59360599	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59808396	0.95[EUR][1000 genomes]
rs59920981	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59997215	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60200908	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61021982	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7182896	0.95[EUR][1000 genomes]
rs72623993	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72623994	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72623995	0.95[EUR][1000 genomes]
rs72623996	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72623997	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72623998	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72623999	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72624000	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs877974	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs877975	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1049534	chr15:52903314-53022926	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52973000-52979200	Enhancers	Primary B cells from peripheral blood	blood
2	chr15:52973400-52977000	Enhancers	Primary T cells from cord blood	blood
3	chr15:52974000-52976600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr15:52974000-52977200	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:52975800-52976600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:52976200-52977000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr15:52976200-52979400	Enhancers	Primary B cells from cord blood	blood
8	chr15:52976400-52976600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:52976400-52977800	Enhancers	GM12878-XiMat	blood
10	chr15:52976400-52981600	Weak transcription	Liver	Liver

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