Variant report

Variant	rs7182896
Chromosome Location	chr15:52963309-52963310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52953761..52955379-chr15:52962846..52965093,2	K562	blood:
2	chr15:52960932..52963378-chr15:52964421..52966034,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17708373	1.00[EUR][1000 genomes]
rs2414172	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35689765	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3751613	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57141956	0.95[EUR][1000 genomes]
rs59336405	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59360599	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59808396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59920981	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59997215	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60200908	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61021982	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72623993	1.00[EUR][1000 genomes]
rs72623994	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72623995	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72623996	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72623997	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72623998	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72623999	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72624000	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs877974	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs877975	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs933861	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv457140	chr15:52901433-52968746	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1049534	chr15:52903314-53022926	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52871800-52967600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:52944200-52965800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:52944400-52969600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:52944400-52970200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:52944600-52965000	Strong transcription	Primary B cells from cord blood	blood
6	chr15:52944600-52965400	Strong transcription	Primary B cells from peripheral blood	blood
7	chr15:52944600-52969800	Weak transcription	Fetal Brain Male	brain
8	chr15:52945000-52965400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:52945000-52968600	Weak transcription	HepG2	liver
10	chr15:52945400-52965400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:52946000-52965200	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr15:52946000-52968200	Weak transcription	Fetal Heart	heart
13	chr15:52946000-52968600	Weak transcription	Stomach Mucosa	stomach
14	chr15:52949200-52965400	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr15:52949200-52965600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:52949400-52966400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr15:52950400-52965800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:52950400-52965800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:52950400-52969400	Weak transcription	A549	lung
20	chr15:52950800-52968400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:52951000-52965600	Strong transcription	Adipose Nuclei	Adipose
22	chr15:52951000-52970200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:52952000-52967400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr15:52952000-52968000	Strong transcription	Fetal Thymus	thymus
25	chr15:52952200-52967800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:52952400-52963600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:52952400-52966200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:52953200-52965800	Strong transcription	Primary hematopoietic stem cells	blood
29	chr15:52953200-52967800	Weak transcription	Fetal Intestine Small	intestine
30	chr15:52953600-52965000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:52957000-52966400	Weak transcription	Esophagus	oesophagus
32	chr15:52957400-52964000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:52957400-52967400	Weak transcription	Right Atrium	heart
34	chr15:52957400-52970000	Weak transcription	Colonic Mucosa	Colon
35	chr15:52957400-52970000	Weak transcription	Lung	lung
36	chr15:52957600-52964000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:52958000-52966800	Strong transcription	NHDF-Ad	bronchial
38	chr15:52958200-52966400	Strong transcription	Liver	Liver
39	chr15:52958800-52964400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:52958800-52965000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:52959200-52967200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:52959400-52963800	Strong transcription	Hela-S3	cervix
43	chr15:52960000-52969000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:52960200-52965200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:52960400-52967600	Weak transcription	Ovary	ovary
46	chr15:52960400-52969600	Weak transcription	HMEC	breast
47	chr15:52960600-52963600	Weak transcription	Fetal Kidney	kidney
48	chr15:52960600-52965600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:52960600-52969400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:52960600-52969400	Weak transcription	NHEK	skin

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