Variant report

Variant	rs72624000
Chromosome Location	chr15:52974072-52974073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52973784..52974298-chr9:77306448..77307146,2	MCF-7	breast:
2	chr15:52973784..52977367-chr15:53024530..53026901,4	MCF-7	breast:
3	chr15:52966022..52968187-chr15:52971881..52974523,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17708373	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2414172	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35689765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3751613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57141956	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59336405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59360599	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59808396	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59920981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59997215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60200908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61021982	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7182896	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72623993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72623994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72623995	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72623996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72623997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72623998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72623999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs877974	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs877975	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs933861	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1049534	chr15:52903314-53022926	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52972000-52974800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:52972200-52974200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr15:52972200-52974200	Enhancers	Liver	Liver
4	chr15:52972200-52974200	Flanking Active TSS	GM12878-XiMat	blood
5	chr15:52972400-52974200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:52972400-52974200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr15:52972400-52974200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:52972400-52974200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:52972400-52974200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr15:52972400-52975000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:52972400-52975200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:52972400-52975200	Weak transcription	Fetal Thymus	thymus
13	chr15:52972600-52974400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:52972600-52974400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:52972600-52974600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:52972800-52974200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:52973000-52979200	Enhancers	Primary B cells from peripheral blood	blood
18	chr15:52973400-52977000	Enhancers	Primary T cells from cord blood	blood
19	chr15:52973600-52974400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:52974000-52974600	Enhancers	Primary B cells from cord blood	blood
21	chr15:52974000-52975000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr15:52974000-52976400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:52974000-52976400	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr15:52974000-52976600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr15:52974000-52977200	Enhancers	Primary hematopoietic stem cells	blood

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