Variant report

Variant	rs57148321
Chromosome Location	chr9:107921600-107921601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:107920918..107925009-chr9:108005795..108008612,5	MCF-7	breast:
2	chr9:107921257..107922704-chr9:108177309..108178719,12	MCF-7	breast:
3	chr9:107827277..107830137-chr9:107919737..107922179,2	MCF-7	breast:
4	chr9:107921242..107922819-chr9:108005995..108008085,2	MCF-7	breast:
5	chr9:107916599..107918896-chr9:107920821..107923069,3	K562	blood:

Variant related genes	Relation type
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56873740	1.00[EUR][1000 genomes]
rs58061200	1.00[EUR][1000 genomes]
rs61503324	1.00[EUR][1000 genomes]
rs7040524	1.00[EUR][1000 genomes]
rs73521916	1.00[EUR][1000 genomes]
rs73521925	1.00[EUR][1000 genomes]
rs73521935	1.00[EUR][1000 genomes]
rs73521936	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv893684	chr9:107893629-108001107	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107902000-107921800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:107917600-107922000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:107917600-107922200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:107919800-107921800	Weak transcription	Brain Substantia Nigra	brain
5	chr9:107919800-107922000	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:107919800-107922000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:107919800-107922200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:107919800-107922200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:107919800-107922200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:107919800-107922200	Weak transcription	Brain Anterior Caudate	brain
11	chr9:107919800-107922200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:107919800-107922200	Weak transcription	Dnd41	blood
13	chr9:107919800-107924600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:107919800-107924600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:107919800-107924800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:107920400-107922000	Enhancers	HepG2	liver
17	chr9:107920400-107922200	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:107920400-107924600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:107921200-107921600	Weak transcription	A549	lung
20	chr9:107921600-107922600	Enhancers	A549	lung

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