Variant report

Variant	rs73521935
Chromosome Location	chr9:107876509-107876510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107875728..107878263-chr9:108005862..108008830,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10991555	0.87[AFR][1000 genomes]
rs56873740	1.00[EUR][1000 genomes]
rs57148321	1.00[EUR][1000 genomes]
rs58061200	1.00[EUR][1000 genomes]
rs61503324	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs67928600	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7040524	1.00[EUR][1000 genomes]
rs73521916	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521936	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107866600-107876800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:107875200-107877800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:107875800-107880200	Enhancers	Fetal Thymus	thymus
4	chr9:107876000-107877400	Enhancers	Primary T cells from cord blood	blood
5	chr9:107876000-107878800	Enhancers	Dnd41	blood
6	chr9:107876000-107879000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:107876200-107876600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr9:107876200-107876600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:107876200-107876800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:107876200-107876800	Enhancers	Brain Germinal Matrix	brain
11	chr9:107876200-107877200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr9:107876200-107878400	Enhancers	Psoas Muscle	Psoas
13	chr9:107876200-107878600	Enhancers	Primary B cells from peripheral blood	blood
14	chr9:107876200-107878600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:107876200-107878600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:107876200-107878600	Enhancers	Thymus	Thymus
17	chr9:107876200-107878800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:107876200-107878800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:107876200-107878800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr9:107876200-107879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr9:107876200-107879000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:107876200-107879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:107876200-107879400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr9:107876200-107879400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr9:107876200-107879400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:107876200-107879800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr9:107876200-107880000	Enhancers	Fetal Intestine Small	intestine
28	chr9:107876400-107877000	Enhancers	Spleen	Spleen
29	chr9:107876400-107877200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:107876400-107877200	Enhancers	Liver	Liver
31	chr9:107876400-107878000	Enhancers	GM12878-XiMat	blood
32	chr9:107876400-107878600	Enhancers	Primary B cells from cord blood	blood
33	chr9:107876400-107879000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr9:107876400-107879000	Enhancers	Primary hematopoietic stem cells	blood
35	chr9:107876400-107879800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr9:107876400-107880000	Enhancers	Fetal Muscle Leg	muscle

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