Variant report

Variant	rs7040524
Chromosome Location	chr9:107917030-107917031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:107916599..107918896-chr9:107920821..107923069,3	K562	blood:
2	chr9:107825229..107827965-chr9:107915756..107917497,2	MCF-7	breast:
3	chr9:107689040..107691666-chr9:107915377..107917128,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165029	Chromatin interaction
ENSG00000226334	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56873740	1.00[EUR][1000 genomes]
rs57148321	1.00[EUR][1000 genomes]
rs58061200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61503324	1.00[EUR][1000 genomes]
rs73521916	1.00[EUR][1000 genomes]
rs73521925	1.00[EUR][1000 genomes]
rs73521935	1.00[EUR][1000 genomes]
rs73521936	1.00[EUR][1000 genomes]
rs7867378	1.00[MEX][hapmap]
rs7868841	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv893684	chr9:107893629-108001107	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107902000-107921800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:107904400-107919600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:107905600-107917400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:107907600-107917200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:107910000-107917200	Weak transcription	Fetal Thymus	thymus
6	chr9:107911400-107919400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:107913800-107917400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:107913800-107917400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr9:107914000-107917200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:107914000-107917200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:107914000-107917400	Weak transcription	Primary T cells from cord blood	blood
12	chr9:107914000-107917400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:107914000-107919200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr9:107914000-107919200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:107914000-107919400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:107914200-107917200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:107914200-107917200	Weak transcription	NH-A	brain
18	chr9:107914200-107917200	Weak transcription	NHLF	lung
19	chr9:107914200-107917800	Weak transcription	Osteobl	bone
20	chr9:107914200-107919200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:107914200-107919200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:107915000-107917200	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:107915000-107917200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:107915000-107919600	Weak transcription	Stomach Mucosa	stomach
25	chr9:107916600-107917800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:107916600-107917800	Enhancers	A549	lung
27	chr9:107916600-107917800	Enhancers	Hela-S3	cervix
28	chr9:107916600-107918400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr9:107916800-107917200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr9:107916800-107917600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:107916800-107917600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:107916800-107917800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:107917000-107917400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr9:107917000-107917400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:107917000-107917600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:107917000-107917600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:107917000-107917600	Enhancers	HMEC	breast
38	chr9:107917000-107917600	Enhancers	NHDF-Ad	bronchial
39	chr9:107917000-107917600	Enhancers	NHEK	skin
40	chr9:107917000-107917800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:107917000-107917800	Enhancers	Adipose Nuclei	Adipose
42	chr9:107917000-107917800	Enhancers	HepG2	liver
43	chr9:107917000-107918000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:107917000-107919800	Enhancers	Primary neutrophils fromperipheralblood	blood

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