Variant report

Variant	rs10991555
Chromosome Location	chr9:107880034-107880035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12003255	0.86[EUR][1000 genomes]
rs4317634	0.86[EUR][1000 genomes]
rs4381000	0.86[EUR][1000 genomes]
rs55872032	0.86[EUR][1000 genomes]
rs56202605	0.83[EUR][1000 genomes]
rs56232005	0.83[EUR][1000 genomes]
rs59179413	0.89[EUR][1000 genomes]
rs61503324	0.81[AFR][1000 genomes]
rs66488152	0.83[EUR][1000 genomes]
rs67928600	0.82[AFR][1000 genomes]
rs7022410	0.83[EUR][1000 genomes]
rs7033651	0.83[EUR][1000 genomes]
rs7047481	0.83[EUR][1000 genomes]
rs72607116	0.86[EUR][1000 genomes]
rs72607117	0.86[EUR][1000 genomes]
rs72607118	0.86[EUR][1000 genomes]
rs72607119	0.86[EUR][1000 genomes]
rs72607120	0.86[EUR][1000 genomes]
rs72607121	0.86[EUR][1000 genomes]
rs72607122	0.86[EUR][1000 genomes]
rs72607123	0.86[EUR][1000 genomes]
rs72607124	0.86[EUR][1000 genomes]
rs72607125	0.86[EUR][1000 genomes]
rs73521925	0.87[AFR][1000 genomes]
rs73521935	0.87[AFR][1000 genomes]
rs7861505	0.83[EUR][1000 genomes]
rs7862701	0.90[EUR][1000 genomes]
rs7866729	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7872742	0.86[EUR][1000 genomes]
rs9792436	0.83[EUR][1000 genomes]
rs9792586	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9792666	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107875800-107880200	Enhancers	Fetal Thymus	thymus
2	chr9:107877000-107883600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:107877800-107881000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:107877800-107888600	Weak transcription	NH-A	brain
5	chr9:107878200-107880200	Enhancers	HepG2	liver
6	chr9:107878200-107880400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:107878200-107881000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:107878200-107881400	Enhancers	Brain Germinal Matrix	brain
9	chr9:107878200-107883200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:107878400-107881200	Weak transcription	Psoas Muscle	Psoas
11	chr9:107878600-107881200	Weak transcription	Adipose Nuclei	Adipose
12	chr9:107878800-107881000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:107878800-107881000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:107878800-107881200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:107878800-107881200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:107878800-107881200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:107878800-107881200	Weak transcription	Placenta	Placenta
18	chr9:107879000-107881200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:107879000-107881200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:107879000-107881200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:107879000-107881200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:107879000-107881200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:107879000-107881200	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:107879000-107881400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:107879000-107881600	Weak transcription	Brain Substantia Nigra	brain
26	chr9:107879000-107884000	Weak transcription	Primary T cells from cord blood	blood
27	chr9:107879000-107884000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr9:107879000-107884200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr9:107879000-107884400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr9:107879200-107884000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:107879400-107880400	Enhancers	Rectal Smooth Muscle	rectum
32	chr9:107879400-107883800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr9:107879400-107883800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:107879400-107884400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr9:107879600-107884200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr9:107879800-107880200	Enhancers	Fetal Heart	heart
37	chr9:107879800-107881200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr9:107879800-107884200	Weak transcription	Fetal Intestine Large	intestine
39	chr9:107879800-107888200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:107880000-107881000	Weak transcription	Colon Smooth Muscle	Colon
41	chr9:107880000-107881000	Weak transcription	Fetal Brain Female	brain
42	chr9:107880000-107881000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:107880000-107881200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr9:107880000-107881200	Weak transcription	Fetal Muscle Leg	muscle
45	chr9:107880000-107881200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:107880000-107881600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr9:107880000-107882600	Weak transcription	Fetal Intestine Small	intestine
48	chr9:107880000-107884200	Weak transcription	Fetal Brain Male	brain

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