Variant report

Variant	rs4317634
Chromosome Location	chr9:107886672-107886673
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107799699..107801685-chr9:107886470..107888677,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10991555	0.86[EUR][1000 genomes]
rs12003255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4381000	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55872032	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56202605	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56232005	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59179413	0.90[EUR][1000 genomes]
rs66488152	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7022410	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7033651	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7047481	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72607110	0.90[ASN][1000 genomes]
rs72607111	0.90[ASN][1000 genomes]
rs72607112	0.99[ASN][1000 genomes]
rs72607113	0.99[ASN][1000 genomes]
rs72607114	0.99[ASN][1000 genomes]
rs72607115	0.99[ASN][1000 genomes]
rs72607116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607123	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607124	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607125	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7866729	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7872742	0.80[EUR][1000 genomes]
rs9792436	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9792586	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9792666	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9792667	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107877800-107888600	Weak transcription	NH-A	brain
2	chr9:107879800-107888200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:107881800-107888400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:107881800-107889800	Weak transcription	Esophagus	oesophagus
5	chr9:107882400-107900600	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:107883200-107888000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:107883400-107888000	Weak transcription	Adipose Nuclei	Adipose
8	chr9:107884600-107888400	Weak transcription	Brain Anterior Caudate	brain
9	chr9:107884800-107888000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:107884800-107888000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:107884800-107888000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:107884800-107888200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:107884800-107888200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:107884800-107888200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:107884800-107888200	Weak transcription	Fetal Thymus	thymus
16	chr9:107885000-107887200	Weak transcription	Primary T cells from cord blood	blood
17	chr9:107885000-107887800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:107885000-107887800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:107885000-107888200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:107885000-107888200	Weak transcription	Fetal Intestine Small	intestine
21	chr9:107885000-107888400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:107885000-107889400	Weak transcription	Fetal Intestine Large	intestine
23	chr9:107886400-107887000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr9:107886600-107887200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:107886600-107887800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr9:107886600-107888200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr9:107886600-107891400	Enhancers	Primary monocytes fromperipheralblood	blood

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