Variant report

Variant	rs9792666
Chromosome Location	chr9:107887738-107887739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107752738..107754910-chr9:107887167..107889411,2	MCF-7	breast:
2	chr9:107799699..107801685-chr9:107886470..107888677,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230013	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10991555	0.83[EUR][1000 genomes]
rs12003255	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4317634	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4381000	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55872032	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56202605	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56232005	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59179413	0.86[EUR][1000 genomes]
rs66488152	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7022410	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7033651	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7047481	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72607110	0.84[ASN][1000 genomes]
rs72607111	0.84[ASN][1000 genomes]
rs72607112	0.93[ASN][1000 genomes]
rs72607113	0.93[ASN][1000 genomes]
rs72607114	0.93[ASN][1000 genomes]
rs72607115	0.93[ASN][1000 genomes]
rs72607116	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607117	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607118	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607119	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607120	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607121	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607122	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607123	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72607124	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72607125	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866729	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792436	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792667	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107877800-107888600	Weak transcription	NH-A	brain
2	chr9:107879800-107888200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:107881800-107888400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:107881800-107889800	Weak transcription	Esophagus	oesophagus
5	chr9:107882400-107900600	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:107883200-107888000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:107883400-107888000	Weak transcription	Adipose Nuclei	Adipose
8	chr9:107884600-107888400	Weak transcription	Brain Anterior Caudate	brain
9	chr9:107884800-107888000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:107884800-107888000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:107884800-107888000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:107884800-107888200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:107884800-107888200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:107884800-107888200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:107884800-107888200	Weak transcription	Fetal Thymus	thymus
16	chr9:107885000-107887800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr9:107885000-107887800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr9:107885000-107888200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:107885000-107888200	Weak transcription	Fetal Intestine Small	intestine
20	chr9:107885000-107888400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:107885000-107889400	Weak transcription	Fetal Intestine Large	intestine
22	chr9:107886600-107887800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr9:107886600-107888200	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr9:107886600-107891400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr9:107887200-107888200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:107887400-107887800	Weak transcription	Primary T cells from cord blood	blood
27	chr9:107887600-107888600	Weak transcription	Primary B cells from cord blood	blood
28	chr9:107887600-107894600	Enhancers	Primary T helper cells fromperipheralblood	blood

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