Variant report

Variant	rs7872742
Chromosome Location	chr9:107882595-107882596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107877326..107879899-chr9:107880763..107883128,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10991555	0.86[EUR][1000 genomes]
rs12003255	0.80[EUR][1000 genomes]
rs4317634	0.80[EUR][1000 genomes]
rs4381000	0.80[EUR][1000 genomes]
rs55872032	0.80[EUR][1000 genomes]
rs59179413	0.83[EUR][1000 genomes]
rs72607116	0.80[EUR][1000 genomes]
rs72607117	0.80[EUR][1000 genomes]
rs72607118	0.80[EUR][1000 genomes]
rs72607119	0.80[EUR][1000 genomes]
rs72607120	0.80[EUR][1000 genomes]
rs72607121	0.80[EUR][1000 genomes]
rs72607122	0.80[EUR][1000 genomes]
rs72607123	0.80[EUR][1000 genomes]
rs72607124	0.80[EUR][1000 genomes]
rs72607125	0.80[EUR][1000 genomes]
rs7861505	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7862701	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107877000-107883600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:107877800-107888600	Weak transcription	NH-A	brain
3	chr9:107878200-107883200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:107879000-107884000	Weak transcription	Primary T cells from cord blood	blood
5	chr9:107879000-107884000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr9:107879000-107884200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:107879000-107884400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr9:107879200-107884000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:107879400-107883800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr9:107879400-107883800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:107879400-107884400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:107879600-107884200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:107879800-107884200	Weak transcription	Fetal Intestine Large	intestine
14	chr9:107879800-107888200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:107880000-107882600	Weak transcription	Fetal Intestine Small	intestine
16	chr9:107880000-107884200	Weak transcription	Fetal Brain Male	brain
17	chr9:107881200-107883400	Enhancers	Adipose Nuclei	Adipose
18	chr9:107881200-107883400	Enhancers	Brain Anterior Caudate	brain
19	chr9:107881400-107884800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:107881600-107883400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:107881800-107882600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:107881800-107882800	Weak transcription	Fetal Thymus	thymus
23	chr9:107881800-107884200	Weak transcription	Brain Substantia Nigra	brain
24	chr9:107881800-107888400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:107881800-107889800	Weak transcription	Esophagus	oesophagus
26	chr9:107882200-107884000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:107882400-107882600	Enhancers	Brain Germinal Matrix	brain
28	chr9:107882400-107900600	Weak transcription	Brain Hippocampus Middle	brain

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