Variant report

Variant	rs7861505
Chromosome Location	chr9:107879948-107879949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10991555	0.83[EUR][1000 genomes]
rs59179413	0.80[EUR][1000 genomes]
rs7862701	0.93[EUR][1000 genomes]
rs7872742	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107875800-107880200	Enhancers	Fetal Thymus	thymus
2	chr9:107876200-107880000	Enhancers	Fetal Intestine Small	intestine
3	chr9:107876400-107880000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:107877000-107880000	Enhancers	Colon Smooth Muscle	Colon
5	chr9:107877000-107883600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:107877800-107881000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:107877800-107888600	Weak transcription	NH-A	brain
8	chr9:107878200-107880200	Enhancers	HepG2	liver
9	chr9:107878200-107880400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:107878200-107881000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:107878200-107881400	Enhancers	Brain Germinal Matrix	brain
12	chr9:107878200-107883200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:107878400-107881200	Weak transcription	Psoas Muscle	Psoas
14	chr9:107878600-107880000	Enhancers	Liver	Liver
15	chr9:107878600-107881200	Weak transcription	Adipose Nuclei	Adipose
16	chr9:107878800-107881000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:107878800-107881000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:107878800-107881200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:107878800-107881200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:107878800-107881200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:107878800-107881200	Weak transcription	Placenta	Placenta
22	chr9:107879000-107880000	Enhancers	Fetal Brain Male	brain
23	chr9:107879000-107880000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr9:107879000-107881200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:107879000-107881200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr9:107879000-107881200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:107879000-107881200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:107879000-107881200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr9:107879000-107881200	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:107879000-107881400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:107879000-107881600	Weak transcription	Brain Substantia Nigra	brain
32	chr9:107879000-107884000	Weak transcription	Primary T cells from cord blood	blood
33	chr9:107879000-107884000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr9:107879000-107884200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr9:107879000-107884400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr9:107879200-107880000	Enhancers	Fetal Muscle Trunk	muscle
37	chr9:107879200-107880000	Enhancers	Stomach Smooth Muscle	stomach
38	chr9:107879200-107884000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:107879400-107880400	Enhancers	Rectal Smooth Muscle	rectum
40	chr9:107879400-107883800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr9:107879400-107883800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:107879400-107884400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:107879600-107880000	Enhancers	Lung	lung
44	chr9:107879600-107880000	Enhancers	Right Ventricle	heart
45	chr9:107879600-107884200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr9:107879800-107880000	Enhancers	Brain Cingulate Gyrus	brain
47	chr9:107879800-107880200	Enhancers	Fetal Heart	heart
48	chr9:107879800-107881200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:107879800-107884200	Weak transcription	Fetal Intestine Large	intestine
50	chr9:107879800-107888200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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