Variant report

Variant	rs57158998
Chromosome Location	chr8:112756962-112756963
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:112753150..112755193-chr8:112756669..112758806,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254262	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs58067213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59929138	1.00[AMR][1000 genomes]
rs7010597	1.00[AMR][1000 genomes]
rs73327944	1.00[AMR][1000 genomes]
rs73327951	1.00[AMR][1000 genomes]
rs73329965	1.00[AMR][1000 genomes]
rs73329983	1.00[AMR][1000 genomes]
rs73329986	1.00[AMR][1000 genomes]
rs73332262	1.00[AMR][1000 genomes]
rs73334278	1.00[AMR][1000 genomes]
rs73336321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336381	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336397	1.00[AMR][1000 genomes]
rs73338312	1.00[AMR][1000 genomes]
rs73338331	1.00[AMR][1000 genomes]
rs73338349	1.00[AMR][1000 genomes]
rs7821717	1.00[AMR][1000 genomes]
rs7843377	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027070	chr8:112490160-112844323	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv611905	chr8:112735588-112791866	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv611906	chr8:112752967-112803755	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112753200-112757600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:112754000-112757200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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