Variant report

Variant	rs7010597
Chromosome Location	chr8:112553113-112553114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16882021	1.00[AMR][1000 genomes]
rs56719443	1.00[AMR][1000 genomes]
rs57158998	1.00[AMR][1000 genomes]
rs58067213	1.00[AMR][1000 genomes]
rs59523937	1.00[AMR][1000 genomes]
rs6999561	1.00[AMR][1000 genomes]
rs73324253	1.00[AMR][1000 genomes]
rs73324254	1.00[AMR][1000 genomes]
rs73324261	1.00[AMR][1000 genomes]
rs73324268	1.00[AMR][1000 genomes]
rs73324287	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324289	1.00[AMR][1000 genomes]
rs73324292	1.00[AMR][1000 genomes]
rs73324297	1.00[AMR][1000 genomes]
rs73326018	1.00[AMR][1000 genomes]
rs73326055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327916	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327944	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327951	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329965	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329983	1.00[AMR][1000 genomes]
rs73329986	1.00[AMR][1000 genomes]
rs73332262	1.00[AMR][1000 genomes]
rs73334278	1.00[AMR][1000 genomes]
rs73336321	1.00[AMR][1000 genomes]
rs73336362	1.00[AMR][1000 genomes]
rs73336371	1.00[AMR][1000 genomes]
rs73336375	1.00[AMR][1000 genomes]
rs73336381	1.00[AMR][1000 genomes]
rs73336397	1.00[AMR][1000 genomes]
rs73341404	1.00[AMR][1000 genomes]
rs7821717	1.00[AMR][1000 genomes]
rs7842965	1.00[AMR][1000 genomes]
rs7843018	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891311	chr8:112088322-112604086	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv465763	chr8:112325064-112712038	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv611902	chr8:112325064-112712038	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1031144	chr8:112327722-112558646	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1027249	chr8:112327722-112711706	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv539721	chr8:112327722-112711706	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1026097	chr8:112382141-112714042	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1017231	chr8:112393019-112711706	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv916709	chr8:112439641-112697491	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv891314	chr8:112463865-112649830	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1027070	chr8:112490160-112844323	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv891315	chr8:112528407-112616415	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv891316	chr8:112528407-112649830	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv831424	chr8:112544488-112706756	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv891317	chr8:112550599-112649830	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv13839	chr8:112552331-112554291	Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112552800-112557800	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links