Variant report

Variant	rs73336371
Chromosome Location	chr8:112752263-112752264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57158998	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58067213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59929138	1.00[AMR][1000 genomes]
rs7010597	1.00[AMR][1000 genomes]
rs73327944	1.00[AMR][1000 genomes]
rs73327951	1.00[AMR][1000 genomes]
rs73329965	1.00[AMR][1000 genomes]
rs73329983	1.00[AMR][1000 genomes]
rs73329986	1.00[AMR][1000 genomes]
rs73332262	1.00[AMR][1000 genomes]
rs73334278	1.00[AMR][1000 genomes]
rs73336321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336362	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73336397	1.00[AMR][1000 genomes]
rs73338312	1.00[AMR][1000 genomes]
rs73338331	1.00[AMR][1000 genomes]
rs73338349	1.00[AMR][1000 genomes]
rs7821717	1.00[AMR][1000 genomes]
rs7843377	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027070	chr8:112490160-112844323	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv611905	chr8:112735588-112791866	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112751400-112753400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr8:112751600-112752400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:112752200-112752600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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