Variant report

Variant	rs57170676
Chromosome Location	chr11:59830490-59830491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10792255	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10897003	0.82[AMR][1000 genomes]
rs10897006	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10897007	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11821744	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11824940	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11825794	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12221875	0.82[AMR][1000 genomes]
rs12225069	0.80[AMR][1000 genomes]
rs12800461	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12805696	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12806720	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17154511	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17154527	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2298584	0.82[AMR][1000 genomes]
rs35691621	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7102260	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7106518	0.82[AMR][1000 genomes]
rs7108307	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7109174	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7113196	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59822800-59832000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:59827000-59831600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:59829600-59830600	Enhancers	K562	blood
4	chr11:59829800-59831200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:59830000-59831200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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