Variant report
| Variant | rs57186831 |
|---|---|
| Chromosome Location | chr5:57175951-57175952 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57174384..57178460-chr5:57754428..57757205,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs16887547 | 1.00[AMR][1000 genomes] |
| rs55773706 | 1.00[AMR][1000 genomes] |
| rs56010472 | 1.00[AMR][1000 genomes] |
| rs56170564 | 1.00[AMR][1000 genomes] |
| rs57966450 | 1.00[AMR][1000 genomes] |
| rs59873061 | 1.00[AMR][1000 genomes] |
| rs6869354 | 1.00[AMR][1000 genomes] |
| rs73757409 | 1.00[AMR][1000 genomes] |
| rs73757414 | 1.00[AMR][1000 genomes] |
| rs73757423 | 1.00[AMR][1000 genomes] |
| rs73757424 | 1.00[AMR][1000 genomes] |
| rs73757425 | 1.00[AMR][1000 genomes] |
| rs73757430 | 1.00[AMR][1000 genomes] |
| rs73757432 | 1.00[AMR][1000 genomes] |
| rs73757448 | 1.00[AMR][1000 genomes] |
| rs73757450 | 1.00[AMR][1000 genomes] |
| rs73757484 | 1.00[AMR][1000 genomes] |
| rs73757488 | 1.00[AMR][1000 genomes] |
| rs7711577 | 1.00[AMR][1000 genomes] |
| rs7723032 | 1.00[AMR][1000 genomes] |
| rs7725152 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525330 | chr5:56931673-57320343 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2756302 | chr5:56978143-57180143 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830310 | chr5:56989346-57176006 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57175000-57185200 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
