Variant report

Variant	rs73757488
Chromosome Location	chr5:57198038-57198039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:57197843-57198198	SK-N-SH	brain:	n/a	n/a
2	FOXM1	chr5:57197673-57198432	ECC-1	luminal epithelium:	n/a	n/a
3	TEAD4	chr5:57197749-57198329	ECC-1	luminal epithelium:	n/a	n/a
4	NR3C1	chr5:57197842-57198264	ECC-1	luminal epithelium:	n/a	n/a
5	ESR1	chr5:57197839-57198267	ECC-1	luminal epithelium:	n/a	n/a
6	GATA3	chr5:57197814-57198344	SK-N-SH	brain:	n/a	n/a
7	NFIC	chr5:57197675-57198460	ECC-1	luminal epithelium:	n/a	n/a
8	PBX3	chr5:57197690-57198308	SK-N-SH	brain:	n/a	n/a
9	EP300	chr5:57197770-57198275	SK-N-SH_RA	brain:	n/a	n/a
10	TEAD4	chr5:57197835-57198310	ECC-1	luminal epithelium:	n/a	n/a
11	TCF12	chr5:57197778-57198505	SK-N-SH	brain:	n/a	n/a
12	GATA3	chr5:57197687-57198427	SK-N-SH	brain:	n/a	n/a
13	TCF12	chr5:57197849-57198444	ECC-1	luminal epithelium:	n/a	n/a
14	EP300	chr5:57197821-57198328	ECC-1	luminal epithelium:	n/a	n/a
15	EP300	chr5:57197833-57198318	SK-N-SH_RA	brain:	n/a	n/a
16	NFIC	chr5:57197810-57198312	ECC-1	luminal epithelium:	n/a	n/a
17	EP300	chr5:57197745-57198327	ECC-1	luminal epithelium:	n/a	n/a
18	PBX3	chr5:57197807-57198317	SK-N-SH	brain:	n/a	n/a
19	NFIC	chr5:57197734-57198367	SK-N-SH	brain:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57190475..57192402-chr5:57196595..57198584,2	K562	blood:
2	chr5:57196816..57199128-chr5:57201198..57204022,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16887547	1.00[AMR][1000 genomes]
rs55773706	1.00[AMR][1000 genomes]
rs56010472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56170564	1.00[AMR][1000 genomes]
rs57186831	1.00[AMR][1000 genomes]
rs57966450	1.00[AMR][1000 genomes]
rs6869354	1.00[AMR][1000 genomes]
rs73757423	1.00[AMR][1000 genomes]
rs73757424	1.00[AMR][1000 genomes]
rs73757425	1.00[AMR][1000 genomes]
rs73757430	1.00[AMR][1000 genomes]
rs73757432	1.00[AMR][1000 genomes]
rs73757448	1.00[AMR][1000 genomes]
rs73757450	1.00[AMR][1000 genomes]
rs73757484	1.00[AMR][1000 genomes]
rs7711577	1.00[AMR][1000 genomes]
rs7723032	1.00[AMR][1000 genomes]
rs7725152	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57187800-57202600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:57192600-57203800	Weak transcription	HSMMtube	muscle
3	chr5:57196400-57198800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr5:57196400-57200600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:57196600-57198400	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:57196600-57198400	Weak transcription	Psoas Muscle	Psoas
7	chr5:57196600-57199200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:57196800-57199200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:57197400-57200200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr5:57197600-57198800	Enhancers	Hela-S3	cervix
11	chr5:57197800-57198800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:57197800-57199200	Enhancers	Fetal Stomach	stomach
13	chr5:57197800-57199800	Enhancers	Fetal Lung	lung
14	chr5:57198000-57198200	Enhancers	Brain Anterior Caudate	brain
15	chr5:57198000-57198400	Enhancers	Rectal Smooth Muscle	rectum
16	chr5:57198000-57199000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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