Variant report

Variant	rs73757484
Chromosome Location	chr5:57192378-57192379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16887547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773706	1.00[AMR][1000 genomes]
rs56010472	1.00[AMR][1000 genomes]
rs56170564	1.00[AMR][1000 genomes]
rs57186831	1.00[AMR][1000 genomes]
rs57966450	1.00[AMR][1000 genomes]
rs59873061	1.00[AMR][1000 genomes]
rs6869354	1.00[AMR][1000 genomes]
rs73757423	1.00[AMR][1000 genomes]
rs73757424	1.00[AMR][1000 genomes]
rs73757425	1.00[AMR][1000 genomes]
rs73757430	1.00[AMR][1000 genomes]
rs73757432	1.00[AMR][1000 genomes]
rs73757448	1.00[AMR][1000 genomes]
rs73757450	1.00[AMR][1000 genomes]
rs73757488	1.00[AMR][1000 genomes]
rs7711577	1.00[AMR][1000 genomes]
rs7723032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7725152	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57185800-57195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57187800-57202600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:57191200-57192600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr5:57191400-57192600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:57191400-57192600	Enhancers	HSMM	muscle
6	chr5:57191400-57192600	Enhancers	Osteobl	bone
7	chr5:57191800-57196200	Weak transcription	Ovary	ovary
8	chr5:57192000-57195600	Weak transcription	Fetal Lung	lung
9	chr5:57192000-57196400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:57192200-57192600	Enhancers	HSMMtube	muscle
11	chr5:57192200-57195800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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