The 2.0 version of rSNPBase

Variant report

Variant rs57244892
Chromosome Location chr5:115900263-115900264
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115880800-115900600 Weak transcription Fetal Kidney kidney
2 chr5:115886600-115901000 Weak transcription Placenta Placenta
3 chr5:115890000-115900800 Enhancers Brain Hippocampus Middle brain
4 chr5:115890600-115907800 Weak transcription Spleen Spleen
5 chr5:115890800-115907600 Weak transcription Colonic Mucosa Colon
6 chr5:115891000-115900600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr5:115891000-115907600 Weak transcription Ovary ovary
8 chr5:115891200-115904600 Weak transcription Fetal Stomach stomach
9 chr5:115891400-115905200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr5:115893800-115902400 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr5:115894400-115900800 Enhancers Brain Cingulate Gyrus brain
12 chr5:115894400-115902600 Enhancers Brain Substantia Nigra brain
13 chr5:115895600-115901400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr5:115895800-115902400 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr5:115896000-115904800 Weak transcription Duodenum Mucosa Duodenum
16 chr5:115896000-115905000 Weak transcription Psoas Muscle Psoas
17 chr5:115896000-115905200 Weak transcription Lung lung
18 chr5:115896000-115907600 Weak transcription Fetal Muscle Trunk muscle
19 chr5:115896200-115901000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr5:115896400-115904200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr5:115896600-115905800 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr5:115897200-115901000 Weak transcription Fetal Intestine Large intestine
23 chr5:115897200-115909800 Transcr. at gene 5' and 3' HUES6 Cell Line embryonic stem cell
24 chr5:115897400-115900600 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr5:115898000-115903600 Enhancers Brain Angular Gyrus brain
26 chr5:115898400-115902600 Enhancers H1 Cell Line embryonic stem cell
27 chr5:115898400-115907400 Enhancers Fetal Adrenal Gland Adrenal Gland
28 chr5:115898600-115905200 Genic enhancers ES-UCSF4 Cell Line embryonic stem cell
29 chr5:115898800-115901000 Weak transcription Pancreas Pancrea
30 chr5:115898800-115902200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
31 chr5:115898800-115902200 Enhancers Fetal Brain Female brain
32 chr5:115898800-115902400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr5:115898800-115902400 Weak transcription Left Ventricle heart
34 chr5:115898800-115904200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
35 chr5:115898800-115904400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr5:115899000-115900400 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
37 chr5:115899000-115900400 Enhancers Fetal Brain Male brain
38 chr5:115899000-115901200 Weak transcription Primary hematopoietic stem cells blood
39 chr5:115899000-115902600 Enhancers Cortex derived primary cultured neurospheres brain
40 chr5:115899200-115901800 Enhancers iPS-15b Cell Line embryonic stem cell
41 chr5:115899400-115900400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
42 chr5:115899400-115902000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr5:115899400-115903200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr5:115899600-115900400 Enhancers Fetal Intestine Small intestine
45 chr5:115899600-115900600 Enhancers H9 Cell Line embryonic stem cell
46 chr5:115899600-115900800 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
47 chr5:115899600-115902000 Enhancers Fetal Muscle Leg muscle
48 chr5:115899600-115902800 Transcr. at gene 5' and 3' ES-I3 Cell Line embryonic stem cell
49 chr5:115899800-115901400 Weak transcription Brain Germinal Matrix brain
50 chr5:115899800-115902600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015