Variant report

Variant	rs59374726
Chromosome Location	chr5:115906809-115906810
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:115906802-115906810	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115904129..115907739-chr5:115909265..115911366,3	MCF-7	breast:
2	chr5:115901171..115904653-chr5:115905070..115909680,4	K562	blood:

Variant related genes	Relation type
ENSG00000249167	TF binding region
ENSG00000092421	Chromatin interaction
ENSG00000249167	Chromatin interaction

rs_ID	r²[population]
rs17140135	0.87[AFR][1000 genomes]
rs57244892	0.90[AFR][1000 genomes]

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115890600-115907800	Weak transcription	Spleen	Spleen
2	chr5:115890800-115907600	Weak transcription	Colonic Mucosa	Colon
3	chr5:115891000-115907600	Weak transcription	Ovary	ovary
4	chr5:115896000-115907600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:115897200-115909800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
6	chr5:115898400-115907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:115900200-115907400	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:115900600-115907000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:115901000-115908000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
10	chr5:115901200-115907600	Weak transcription	Pancreas	Pancrea
11	chr5:115903600-115907400	Enhancers	Brain Hippocampus Middle	brain
12	chr5:115903600-115907600	Weak transcription	Left Ventricle	heart
13	chr5:115904200-115907600	Enhancers	Brain Anterior Caudate	brain
14	chr5:115904400-115907400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr5:115904600-115907000	Weak transcription	Fetal Lung	lung
16	chr5:115904800-115907200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:115904800-115907200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:115905000-115907400	Enhancers	Brain Angular Gyrus	brain
19	chr5:115905200-115907000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:115905200-115907400	Weak transcription	Fetal Stomach	stomach
21	chr5:115905400-115907000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:115905400-115907400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr5:115905400-115907800	Weak transcription	Esophagus	oesophagus
24	chr5:115905800-115908200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr5:115906000-115912400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr5:115906200-115907000	Weak transcription	Fetal Brain Male	brain
27	chr5:115906200-115907000	Enhancers	Fetal Kidney	kidney
28	chr5:115906200-115907000	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr5:115906200-115907400	Weak transcription	Brain Substantia Nigra	brain
30	chr5:115906200-115907600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:115906200-115907600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:115906200-115907600	Weak transcription	Placenta	Placenta
33	chr5:115906200-115907600	Weak transcription	Psoas Muscle	Psoas
34	chr5:115906200-115908200	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
35	chr5:115906400-115907000	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:115906400-115907000	Enhancers	HepG2	liver
37	chr5:115906400-115907200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:115906400-115907800	Active TSS	H9 Cell Line	embryonic stem cell
39	chr5:115906400-115908000	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr5:115906400-115912200	Active TSS	H1 Cell Line	embryonic stem cell
41	chr5:115906400-115912400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:115906600-115907000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:115906600-115907000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr5:115906600-115907000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:115906600-115907000	Flanking Active TSS	Fetal Brain Female	brain
46	chr5:115906600-115907000	Flanking Active TSS	Fetal Intestine Large	intestine
47	chr5:115906600-115907000	Flanking Active TSS	Fetal Intestine Small	intestine
48	chr5:115906600-115907200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr5:115906600-115907400	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr5:115906600-115908000	Active TSS	iPS-15b Cell Line	embryonic stem cell

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