Variant report

Variant	rs57254506
Chromosome Location	chr3:97858193-97858194
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs58748505	1.00[EUR][1000 genomes]
rs59543641	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60261489	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60519591	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60778947	1.00[EUR][1000 genomes]
rs61219243	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6786885	1.00[EUR][1000 genomes]
rs72922098	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72922826	1.00[EUR][1000 genomes]
rs72924114	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72926086	1.00[EUR][1000 genomes]
rs72926102	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927909	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927911	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927919	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927921	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927923	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927924	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927927	0.87[AFR][1000 genomes]
rs72927955	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927958	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927968	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927973	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927975	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72927982	1.00[EUR][1000 genomes]
rs72929909	1.00[EUR][1000 genomes]
rs72929910	1.00[EUR][1000 genomes]
rs72929912	1.00[EUR][1000 genomes]
rs72933943	1.00[EUR][1000 genomes]
rs72933953	1.00[EUR][1000 genomes]
rs72933955	1.00[EUR][1000 genomes]
rs72933957	1.00[EUR][1000 genomes]
rs72933960	1.00[EUR][1000 genomes]
rs72933962	1.00[EUR][1000 genomes]
rs72933966	1.00[EUR][1000 genomes]
rs72933968	1.00[EUR][1000 genomes]
rs72933969	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877207	chr3:97708955-97899294	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3358571	chr3:97845711-97881421	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3340940	chr3:97845804-97881306	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3498162	chr3:97851882-97868630	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3498164	chr3:97851882-97868630	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	nsv460768	chr3:97853159-97890367	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv591043	chr3:97853159-97890367	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
12	esv3362196	chr3:97854330-97890699	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97857800-97858800	Enhancers	HUES6 Cell Line	embryonic stem cell

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