Variant report

Variant	rs72929910
Chromosome Location	chr3:97870331-97870332
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:97870223-97870394	MCF10A-Er-Src	breast:	n/a	chr3:97870231-97870240 chr3:97870231-97870241 chr3:97870233-97870240 chr3:97870232-97870241
2	FOS	chr3:97870109-97870426	MCF10A-Er-Src	breast:	n/a	chr3:97870114-97870123 chr3:97870231-97870240 chr3:97870231-97870241 chr3:97870233-97870240 chr3:97870232-97870241
3	JUND	chr3:97870047-97870402	HepG2	liver:	n/a	chr3:97870114-97870123 chr3:97870231-97870240 chr3:97870231-97870241 chr3:97870233-97870240 chr3:97870230-97870241 chr3:97870232-97870241
4	FOS	chr3:97870123-97870337	MCF10A-Er-Src	breast:	n/a	chr3:97870231-97870240 chr3:97870231-97870241 chr3:97870233-97870240 chr3:97870232-97870241
5	FOS	chr3:97870114-97870399	MCF10A-Er-Src	breast:	n/a	chr3:97870114-97870123 chr3:97870231-97870240 chr3:97870231-97870241 chr3:97870233-97870240 chr3:97870232-97870241

Variant related genes	Relation type
ENSG00000249225	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs57254506	1.00[EUR][1000 genomes]
rs58748505	1.00[EUR][1000 genomes]
rs59543641	1.00[EUR][1000 genomes]
rs60261489	1.00[EUR][1000 genomes]
rs60519591	1.00[EUR][1000 genomes]
rs60778947	1.00[EUR][1000 genomes]
rs61219243	1.00[EUR][1000 genomes]
rs61484212	1.00[AMR][1000 genomes]
rs6786885	1.00[EUR][1000 genomes]
rs72922098	1.00[EUR][1000 genomes]
rs72922826	1.00[EUR][1000 genomes]
rs72924114	1.00[EUR][1000 genomes]
rs72926086	1.00[EUR][1000 genomes]
rs72926102	1.00[EUR][1000 genomes]
rs72927909	1.00[EUR][1000 genomes]
rs72927911	1.00[EUR][1000 genomes]
rs72927919	1.00[EUR][1000 genomes]
rs72927921	1.00[EUR][1000 genomes]
rs72927923	1.00[EUR][1000 genomes]
rs72927924	1.00[EUR][1000 genomes]
rs72927955	1.00[EUR][1000 genomes]
rs72927958	1.00[EUR][1000 genomes]
rs72927968	1.00[EUR][1000 genomes]
rs72927973	1.00[EUR][1000 genomes]
rs72927975	1.00[EUR][1000 genomes]
rs72927982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72933943	1.00[EUR][1000 genomes]
rs72933953	1.00[EUR][1000 genomes]
rs72933955	1.00[EUR][1000 genomes]
rs72933957	1.00[EUR][1000 genomes]
rs72933960	1.00[EUR][1000 genomes]
rs72933962	1.00[EUR][1000 genomes]
rs72933966	1.00[EUR][1000 genomes]
rs72933968	1.00[EUR][1000 genomes]
rs72933969	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877207	chr3:97708955-97899294	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3358571	chr3:97845711-97881421	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3340940	chr3:97845804-97881306	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv460768	chr3:97853159-97890367	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv591043	chr3:97853159-97890367	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3362196	chr3:97854330-97890699	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv3416921	chr3:97859875-97902358	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv877210	chr3:97866177-97992964	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	esv3512265	chr3:97868364-97887899	Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
16	esv3512266	chr3:97868364-97887899	Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97870000-97870600	Enhancers	Fetal Heart	heart

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