Variant report

Variant	rs572824189
Chromosome Location	chr6:58774363-58774364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:56089136..56089874-chr6:58774030..58774536,2	MCF-7	breast:
2	chr6:58772143..58775007-chr6:58776713..58778919,5	K562	blood:
3	chr6:58772384..58775379-chr6:58777406..58779060,3	K562	blood:
4	chr6:58773141..58775009-chr6:58776566..58778429,2	MCF-7	breast:
5	chr19:27738271..27739820-chr6:58772163..58774918,2	MCF-7	breast:
6	chr20:36661511..36663112-chr6:58773928..58776889,2	K562	blood:
7	chr12:38032912..38033432-chr6:58774035..58775015,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101413	Chromatin interaction
ENSG00000101407	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024377	chr6:58082084-58774716	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1020262	chr6:58140288-58774716	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2760987	chr6:58140300-58774716	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1017058	chr6:58165571-58774716	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv603237	chr6:58231219-58780055	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv1032012	chr6:58376124-58774716	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1019783	chr6:58409674-58774716	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1033773	chr6:58447068-58774716	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv427758	chr6:58502261-58780166	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
10	nsv1019258	chr6:58547058-58774716	ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv603241	chr6:58567162-58775043	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1024371	chr6:58613247-58774716	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1025649	chr6:58653250-58774716	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1022731	chr6:58657502-58774716	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1028174	chr6:58661362-58774716	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1028725	chr6:58662879-58774716	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv1034815	chr6:58669656-58774716	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv1031194	chr6:58681762-58774716	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv1024021	chr6:58700635-58774716	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv1033411	chr6:58707568-58774716	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv1034225	chr6:58718659-58774716	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv603242	chr6:58754939-58776198	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
23	nsv603243	chr6:58754939-58779628	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
24	esv3401131	chr6:58771993-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
25	esv3348712	chr6:58772493-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
26	esv3351952	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
27	esv3370259	chr6:58772493-58780166	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
28	esv3402710	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
29	nsv821263	chr6:58773370-58780132	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
30	esv16605	chr6:58773521-58780132	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
31	esv3522846	chr6:58773602-58777174	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
32	esv3522847	chr6:58773602-58777174	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
33	esv3405491	chr6:58773794-58774377	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	esv4510	chr6:58773913-58779741	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
35	esv2440024	chr6:58773927-58778724	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
36	esv6861	chr6:58774124-58777928	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
37	nsv603244	chr6:58774249-58776961	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58773400-58774800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:58773400-58774800	ZNF genes & repeats	Brain Hippocampus Middle	brain
3	chr6:58773400-58774800	ZNF genes & repeats	Colon Smooth Muscle	Colon
4	chr6:58773400-58774800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr6:58773400-58774800	ZNF genes & repeats	Fetal Lung	lung
6	chr6:58773400-58774800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
7	chr6:58773400-58774800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
8	chr6:58773400-58774800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
9	chr6:58773400-58774800	ZNF genes & repeats	GM12878-XiMat	blood
10	chr6:58773400-58774800	ZNF genes & repeats	HUVEC	blood vessel
11	chr6:58773400-58775000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
12	chr6:58773400-58775000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:58773400-58775000	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr6:58773400-58775000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
15	chr6:58773400-58775000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:58773400-58775000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
17	chr6:58773400-58775000	ZNF genes & repeats	Dnd41	blood
18	chr6:58773400-58775200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:58773400-58775200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:58773400-58775200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
21	chr6:58773400-58775400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
22	chr6:58773400-58775400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr6:58773400-58775600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr6:58773400-58775600	ZNF genes & repeats	Liver	Liver
25	chr6:58773400-58775800	ZNF genes & repeats	HMEC	breast
26	chr6:58773400-58776000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:58773400-58776000	ZNF genes & repeats	NH-A	brain
28	chr6:58773400-58776200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:58773400-58776200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:58773400-58776400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:58773400-58776400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr6:58773400-58776600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr6:58773400-58776600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr6:58773400-58776600	ZNF genes & repeats	Gastric	stomach
35	chr6:58773400-58776600	ZNF genes & repeats	Small Intestine	intestine
36	chr6:58773400-58779400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
37	chr6:58773400-58779400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:58773400-58779400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:58773400-58779400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
40	chr6:58773400-58779400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr6:58773400-58779400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
42	chr6:58773400-58779400	ZNF genes & repeats	Adipose Nuclei	Adipose
43	chr6:58773400-58779400	ZNF genes & repeats	Fetal Stomach	stomach
44	chr6:58773400-58779400	ZNF genes & repeats	Left Ventricle	heart
45	chr6:58773600-58774400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
46	chr6:58773600-58774400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:58773600-58774800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:58773600-58774800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:58773600-58774800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:58773600-58774800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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