Variant report

Variant	rs57321648
Chromosome Location	chr3:111553412-111553413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56047120	0.90[AFR][1000 genomes]
rs56154506	1.00[AFR][1000 genomes]
rs57222863	0.90[AFR][1000 genomes]
rs57866569	0.90[AFR][1000 genomes]
rs59496070	0.90[AFR][1000 genomes]
rs73852705	1.00[AFR][1000 genomes]
rs73852706	1.00[AFR][1000 genomes]
rs73855643	1.00[AFR][1000 genomes]
rs73855646	0.90[AFR][1000 genomes]
rs73855648	0.90[AFR][1000 genomes]
rs73855649	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3354799	chr3:111550662-111554185	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv3435973	chr3:111551062-111553810	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3359678	chr3:111551287-111553835	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111544400-111556800	Weak transcription	Liver	Liver
3	chr3:111547600-111556800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:111551200-111556200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:111551400-111564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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