Variant report

Variant	rs57866569
Chromosome Location	chr3:111557805-111557806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56047120	1.00[AFR][1000 genomes]
rs56154506	0.90[AFR][1000 genomes]
rs57222863	1.00[AFR][1000 genomes]
rs57321648	0.90[AFR][1000 genomes]
rs59496070	1.00[AFR][1000 genomes]
rs73852705	0.90[AFR][1000 genomes]
rs73852706	0.90[AFR][1000 genomes]
rs73855643	0.90[AFR][1000 genomes]
rs73855646	1.00[AFR][1000 genomes]
rs73855648	1.00[AFR][1000 genomes]
rs73855649	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111551400-111564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111557400-111559400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:111557400-111564800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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