Variant report

Variant	rs73852705
Chromosome Location	chr3:111570872-111570873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111568994..111570957-chr3:111577766..111580247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144824	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56047120	0.90[AFR][1000 genomes]
rs56154506	1.00[AFR][1000 genomes]
rs57222863	0.90[AFR][1000 genomes]
rs57321648	1.00[AFR][1000 genomes]
rs57866569	0.90[AFR][1000 genomes]
rs59496070	0.90[AFR][1000 genomes]
rs73852706	1.00[AFR][1000 genomes]
rs73855643	1.00[AFR][1000 genomes]
rs73855646	0.90[AFR][1000 genomes]
rs73855648	0.90[AFR][1000 genomes]
rs73855649	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111563000-111577400	Weak transcription	HepG2	liver
3	chr3:111563800-111571200	Weak transcription	Stomach Mucosa	stomach
4	chr3:111565000-111571200	Enhancers	Placenta	Placenta
5	chr3:111566000-111571400	Weak transcription	Fetal Heart	heart
6	chr3:111566200-111577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:111567800-111577400	Weak transcription	Liver	Liver
8	chr3:111567800-111577400	Weak transcription	NHDF-Ad	bronchial
9	chr3:111568000-111571400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:111569400-111571800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:111569600-111571000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:111569600-111572200	Enhancers	Osteobl	bone
13	chr3:111570000-111571000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:111570000-111571200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:111570000-111571200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:111570000-111571600	Enhancers	HMEC	breast
17	chr3:111570000-111571600	Enhancers	NHLF	lung
18	chr3:111570000-111572000	Enhancers	NHEK	skin
19	chr3:111570000-111572200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:111570000-111572400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:111570200-111571000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:111570200-111571000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:111570200-111571000	Flanking Active TSS	HUVEC	blood vessel
24	chr3:111570200-111571200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:111570200-111571200	Enhancers	A549	lung
26	chr3:111570200-111571600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr3:111570200-111571800	Enhancers	Adipose Nuclei	Adipose
28	chr3:111570200-111572400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:111570200-111572600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:111570200-111574400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:111570400-111571000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:111570400-111571000	Enhancers	Fetal Kidney	kidney
33	chr3:111570400-111571200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:111570400-111571200	Enhancers	Fetal Muscle Leg	muscle
35	chr3:111570400-111571800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr3:111570400-111571800	Enhancers	Primary T cells from cord blood	blood
37	chr3:111570400-111571800	Enhancers	Primary hematopoietic stem cells	blood
38	chr3:111570400-111577600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:111570600-111571000	Enhancers	Right Ventricle	heart
40	chr3:111570600-111571200	Enhancers	Right Atrium	heart
41	chr3:111570600-111571400	Enhancers	Stomach Smooth Muscle	stomach
42	chr3:111570600-111571600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:111570600-111571800	Enhancers	NH-A	brain
44	chr3:111570600-111572800	Enhancers	Fetal Intestine Small	intestine
45	chr3:111570600-111572800	Enhancers	Rectal Smooth Muscle	rectum
46	chr3:111570600-111575400	Weak transcription	Small Intestine	intestine
47	chr3:111570800-111571000	Flanking Active TSS	Hela-S3	cervix
48	chr3:111570800-111571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr3:111570800-111571200	Weak transcription	Fetal Intestine Large	intestine
50	chr3:111570800-111571400	Weak transcription	HSMM	muscle

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