Variant report

Variant	rs57323690
Chromosome Location	chr9:18976275-18976276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18975628..18978246-chr9:18981249..18983402,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs55957366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57436869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57499857	1.00[EUR][1000 genomes]
rs59522722	1.00[EUR][1000 genomes]
rs59862486	1.00[EUR][1000 genomes]
rs60698235	1.00[EUR][1000 genomes]
rs60928614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61663532	1.00[EUR][1000 genomes]
rs61743636	1.00[EUR][1000 genomes]
rs7029440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7033843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7038838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7044999	1.00[EUR][1000 genomes]
rs7046604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431282	1.00[EUR][1000 genomes]
rs73433231	1.00[EUR][1000 genomes]
rs73645541	1.00[EUR][1000 genomes]
rs73645542	1.00[EUR][1000 genomes]
rs73645543	1.00[EUR][1000 genomes]
rs73645544	1.00[EUR][1000 genomes]
rs73645546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73645548	1.00[EUR][1000 genomes]
rs73645549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73645552	1.00[EUR][1000 genomes]
rs73645553	1.00[EUR][1000 genomes]
rs73645555	1.00[EUR][1000 genomes]
rs73645557	1.00[EUR][1000 genomes]
rs73645558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73645559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73645561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73645566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73645567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73648806	1.00[EUR][1000 genomes]
rs73648808	1.00[EUR][1000 genomes]
rs73648813	1.00[EUR][1000 genomes]
rs7866186	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18971200-18976600	Weak transcription	Right Atrium	heart
2	chr9:18971200-18979400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:18971200-18981600	Weak transcription	Gastric	stomach
4	chr9:18971400-18976400	Weak transcription	Ovary	ovary
5	chr9:18971400-18979200	Weak transcription	Right Ventricle	heart
6	chr9:18971400-18979400	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:18973200-18976400	Enhancers	Fetal Heart	heart
8	chr9:18974800-18976600	Enhancers	Fetal Lung	lung
9	chr9:18975000-18980600	Enhancers	Fetal Thymus	thymus
10	chr9:18975200-18979400	Weak transcription	Lung	lung
11	chr9:18975600-18976600	Weak transcription	Pancreas	Pancrea
12	chr9:18975800-18976400	Enhancers	NHDF-Ad	bronchial
13	chr9:18975800-18977400	Enhancers	Fetal Stomach	stomach
14	chr9:18976000-18976400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:18976000-18976400	Enhancers	Adipose Nuclei	Adipose
16	chr9:18976000-18976600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:18976000-18976600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:18976000-18976600	Enhancers	Fetal Kidney	kidney
19	chr9:18976000-18976600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr9:18976200-18976400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:18976200-18976400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:18976200-18976400	Enhancers	Aorta	Aorta
23	chr9:18976200-18976400	Enhancers	NHLF	lung
24	chr9:18976200-18976600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:18976200-18976600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:18976200-18976600	Enhancers	Primary hematopoietic stem cells	blood
27	chr9:18976200-18976600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr9:18976200-18976800	Enhancers	Colon Smooth Muscle	Colon
29	chr9:18976200-18977000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:18976200-18977000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr9:18976200-18977400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:18976200-18977400	Enhancers	Stomach Mucosa	stomach
33	chr9:18976200-18977400	Flanking Active TSS	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links