Variant report

Variant	rs73431282
Chromosome Location	chr9:18987864-18987865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs55957366	1.00[EUR][1000 genomes]
rs57323690	1.00[EUR][1000 genomes]
rs57436869	1.00[EUR][1000 genomes]
rs57499857	1.00[EUR][1000 genomes]
rs59522722	1.00[EUR][1000 genomes]
rs59862486	1.00[EUR][1000 genomes]
rs60698235	1.00[EUR][1000 genomes]
rs60928614	1.00[EUR][1000 genomes]
rs61663532	1.00[EUR][1000 genomes]
rs61743636	1.00[EUR][1000 genomes]
rs7029440	1.00[EUR][1000 genomes]
rs7029524	0.85[AMR][1000 genomes]
rs7033843	1.00[EUR][1000 genomes]
rs7038838	1.00[EUR][1000 genomes]
rs7044999	1.00[EUR][1000 genomes]
rs7045246	0.85[AMR][1000 genomes]
rs7046604	1.00[EUR][1000 genomes]
rs73433231	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73645541	1.00[EUR][1000 genomes]
rs73645542	1.00[EUR][1000 genomes]
rs73645543	1.00[EUR][1000 genomes]
rs73645544	1.00[EUR][1000 genomes]
rs73645546	1.00[EUR][1000 genomes]
rs73645548	1.00[EUR][1000 genomes]
rs73645549	1.00[EUR][1000 genomes]
rs73645552	1.00[EUR][1000 genomes]
rs73645553	1.00[EUR][1000 genomes]
rs73645555	1.00[EUR][1000 genomes]
rs73645557	1.00[EUR][1000 genomes]
rs73645558	1.00[EUR][1000 genomes]
rs73645559	1.00[EUR][1000 genomes]
rs73645561	1.00[EUR][1000 genomes]
rs73645566	1.00[EUR][1000 genomes]
rs73645567	1.00[EUR][1000 genomes]
rs73648806	1.00[EUR][1000 genomes]
rs73648808	1.00[EUR][1000 genomes]
rs73648813	1.00[EUR][1000 genomes]
rs7866186	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18984800-18988200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:18985800-18991800	Weak transcription	Pancreas	Pancrea
3	chr9:18985800-18993400	Weak transcription	Fetal Thymus	thymus
4	chr9:18987400-18993600	Weak transcription	Fetal Kidney	kidney

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