Variant report
Variant | rs73645566 |
---|---|
Chromosome Location | chr9:19010401-19010402 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs55957366 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57323690 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57436869 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57499857 | 1.00[EUR][1000 genomes] |
rs59522722 | 1.00[EUR][1000 genomes] |
rs59862486 | 1.00[EUR][1000 genomes] |
rs60698235 | 1.00[EUR][1000 genomes] |
rs60928614 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61663532 | 1.00[EUR][1000 genomes] |
rs61743636 | 1.00[EUR][1000 genomes] |
rs7029440 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7033843 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7038838 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7044999 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7046604 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73431282 | 1.00[EUR][1000 genomes] |
rs73433231 | 1.00[EUR][1000 genomes] |
rs73645541 | 1.00[EUR][1000 genomes] |
rs73645542 | 1.00[EUR][1000 genomes] |
rs73645543 | 1.00[EUR][1000 genomes] |
rs73645544 | 1.00[EUR][1000 genomes] |
rs73645546 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73645548 | 1.00[EUR][1000 genomes] |
rs73645549 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73645552 | 1.00[EUR][1000 genomes] |
rs73645553 | 1.00[EUR][1000 genomes] |
rs73645555 | 1.00[EUR][1000 genomes] |
rs73645557 | 1.00[EUR][1000 genomes] |
rs73645558 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73645559 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73645561 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73645567 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73648806 | 1.00[EUR][1000 genomes] |
rs73648808 | 1.00[EUR][1000 genomes] |
rs73648813 | 1.00[EUR][1000 genomes] |
rs7866186 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv892692 | chr9:18519699-19045502 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv1017820 | chr9:18882219-19587377 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
3 | nsv540078 | chr9:18882219-19587377 | Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
4 | nsv892699 | chr9:18945868-19025693 | Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv1022697 | chr9:18951530-19010894 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv892700 | chr9:18979441-19156784 | Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
7 | nsv892701 | chr9:18999837-19032907 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:19009600-19012400 | Weak transcription | Fetal Stomach | stomach |
2 | chr9:19010000-19013000 | Weak transcription | Fetal Muscle Leg | muscle |