Variant report

Variant	rs573321853
Chromosome Location	chr6:149889012-149889013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149887497..149889067-chr6:149953634..149955368,2	K562	blood:
2	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
3	chr6:149888124..149890319-chr6:149910443..149912439,2	MCF-7	breast:
4	chr6:149887413..149889033-chr6:149958089..149960817,2	K562	blood:
5	chr6:149887503..149889427-chr6:149890997..149894118,3	MCF-7	breast:
6	chr6:149884132..149889842-chr6:149966518..149971305,10	K562	blood:
7	chr6:149887426..149891060-chr6:150037726..150040656,4	K562	blood:
8	chr6:149884836..149889436-chr6:149966369..149971850,7	K562	blood:
9	chr6:149884840..149889202-chr6:150038504..150040931,4	K562	blood:
10	chr6:149887638..149889418-chr6:149897443..149899421,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000186625	Chromatin interaction
ENSG00000131013	Chromatin interaction
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3350697	chr6:149888593-149889334	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv7976	chr6:149888973-149891110	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv7977	chr6:149888973-149891110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149886400-149889200	Active TSS	GM12878-XiMat	blood
2	chr6:149888200-149889200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:149888400-149889200	Weak transcription	Psoas Muscle	Psoas
4	chr6:149888400-149889400	Enhancers	Fetal Heart	heart
5	chr6:149888400-149889400	Enhancers	Spleen	Spleen
6	chr6:149888400-149889600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:149888400-149889600	Enhancers	Small Intestine	intestine
8	chr6:149888400-149893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:149888400-149893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:149888400-149894200	Weak transcription	Ovary	ovary
11	chr6:149888400-149897400	Weak transcription	Lung	lung
12	chr6:149888400-149901600	Weak transcription	Aorta	Aorta
13	chr6:149888400-149902000	Weak transcription	Gastric	stomach
14	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:149888600-149889200	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:149888600-149889200	Enhancers	Fetal Lung	lung
17	chr6:149888600-149889400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:149888600-149889400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr6:149888600-149889400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:149888600-149889400	Enhancers	Liver	Liver
21	chr6:149888600-149889400	Weak transcription	Brain Anterior Caudate	brain
22	chr6:149888600-149889400	Enhancers	Colon Smooth Muscle	Colon
23	chr6:149888600-149889400	Enhancers	Fetal Stomach	stomach
24	chr6:149888600-149889400	Enhancers	Fetal Thymus	thymus
25	chr6:149888600-149889400	Enhancers	Thymus	Thymus
26	chr6:149888600-149889400	Enhancers	HSMM	muscle
27	chr6:149888600-149889600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:149888600-149889600	Enhancers	Primary T cells from cord blood	blood
29	chr6:149888600-149889600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:149888600-149889600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr6:149888600-149889600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:149888600-149889600	Enhancers	Brain Substantia Nigra	brain
33	chr6:149888600-149889600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:149888600-149889600	Enhancers	K562	blood
35	chr6:149888600-149889600	Enhancers	NHEK	skin
36	chr6:149888600-149889800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:149888600-149893800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:149888600-149893800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:149888600-149894000	Weak transcription	Fetal Intestine Large	intestine
40	chr6:149888600-149894200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:149888600-149894400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:149888600-149894600	Weak transcription	Left Ventricle	heart
43	chr6:149888600-149895600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:149888600-149897200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr6:149888600-149897400	Weak transcription	Right Ventricle	heart
46	chr6:149888600-149898000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:149888600-149898400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:149888600-149901400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:149888600-149901400	Weak transcription	Colonic Mucosa	Colon
50	chr6:149888600-149901600	Weak transcription	NH-A	brain

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