Variant report

Variant	rs57340057
Chromosome Location	chr7:120072052-120072053
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs61423147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435836	0.90[AFR][1000 genomes]
rs73435839	0.82[AFR][1000 genomes]
rs73435843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7783876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7800592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024920	chr7:120002420-120083753	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120043200-120075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120071400-120072800	Enhancers	GM12878-XiMat	blood
3	chr7:120071600-120073000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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