Variant report

Variant	rs73435844
Chromosome Location	chr7:120100739-120100740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57340057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61423147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435836	0.90[AFR][1000 genomes]
rs73435839	0.82[AFR][1000 genomes]
rs73435843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73435847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7783876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7800592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120092000-120101200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:120098000-120101200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:120099200-120101800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:120099200-120101800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:120099400-120102000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:120100000-120101600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:120100200-120101600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:120100200-120101800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:120100400-120101600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:120100400-120102400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:120100600-120101000	Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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